PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG407500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 32834 Da PI: 7.3242 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.9 | 4.8e-15 | 94 | 145 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+ Pavir.9NG407500.1.p 94 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 145 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 92 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.16E-12 | 92 | 142 | No hit | No description |
PROSITE profile | PS50888 | 16.412 | 93 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-18 | 93 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-12 | 94 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-11 | 99 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MALLDAVVYP HPQGHFGYGL SWSSDATSFG EWDPFLLASL VQNTEWGEEV GSKKASPEHY 60 AAPSAVEPPS PVTMTKRKRR RPMVVKNEEE IESQRMTHIA VERNRRRQMN EYLAVLRSLM 120 PPSYAQRGDQ ASIVGGAINY VRELEQLLQS LELQRKEHNP NLSNPFAGFF RFPQYSATSA 180 SHCHGGAGNR TNKEERPDRS PQSPSVAADI EASMVEGHAS VKVQAPRRPR QLLRLADGLQ 240 QLGLTTLLLN VSTAGTTVMY SFSLKVEDEC RLSSVEEIAA AVHEILGTVQ ERGGRL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 80 | KRKRRR |
2 | 76 | 80 | RKRRR |
3 | 94 | 105 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG407500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058809 | 1e-66 | AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797243.1 | 0.0 | transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 1e-66 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A3L6SER8 | 0.0 | A0A3L6SER8_PANMI; Transcription factor bHLH96-like | ||||
STRING | Pavir.Ia02758.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 3e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG407500.1.p |
Publications ? help Back to Top | |||
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