PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG393800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 388aa    MW: 43858.8 Da    PI: 6.4459
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG393800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.3e-1986132148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Pavir.9NG393800.2.p  86 KGQWTPEEDRKLVKLVEQFGLRKWSFIAQMLP-GRVGKQCRERWHNHL 132
                          799*****************************.*************97 PP
2Myb_DNA-binding53.65.2e-17140180345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W++eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Pavir.9NG393800.2.p 140 IWSEEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 180
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.43981136IPR017930Myb domain
SuperFamilySSF466892.43E-3283179IPR009057Homeodomain-like
SMARTSM007171.1E-1685134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-3087139IPR009057Homeodomain-like
CDDcd001675.11E-1689132No hitNo description
PfamPF139217.3E-1989146No hitNo description
PROSITE profilePS5129419.938137187IPR017930Myb domain
SMARTSM007171.3E-16137185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-22140185IPR009057Homeodomain-like
CDDcd001671.51E-13141183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVPPATFNDL GHQYFDEREI KKPIFNHASS ISHRFGSQLP LLTPKTEVSN LIETGLGSYK  60
AYEMSDRFVP RKKTSSNSLK KPNVVKGQWT PEEDRKLVKL VEQFGLRKWS FIAQMLPGRV  120
GKQCRERWHN HLRPNIKKDI WSEEEDMVLI QAHKEVGNKW AEIAKRLPGR TENSIKNHWN  180
ATKRRQFARR RSRTSSKRPK SGTLLQNYIK GLGIGPSKNV APLAQPTLPP SSPATTPGAN  240
PAKIDEMLGE HRPSDILDLQ GMLGVHEYNR RETDQSCEEL LAPICSDDFS VADMCEGLFD  300
TKEDASCFQV FAVDEDVDMS YIFNHLDQAI KVDPEIDMEM MWDDDALGCA EPAGAGSAQM  360
ETVHVKEEMD LMEMVAATQK YAETEKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-458218754159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-458218754159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183198RRQFARRRSRTSSKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG393800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A2T7BZQ50.0A0A2T7BZQ5_9POAL; Uncharacterized protein
STRINGPavir.J02718.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-60myb domain protein 98