PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG393400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 284aa    MW: 30078 Da    PI: 7.7265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG393400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08133177554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Pavir.9NG393400.1.p 133 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 177
                          99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-15126187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-10126182No hitNo description
PROSITE profilePS5088815.77128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-14130188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6133177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAGQPPQGPE DDFLDQFFSM AGGSYSAAAA GGGRAAGDQP FSLALSLDAA AAEASGSGKH  60
AEGGKADREA GQLPGLFPPV FGRGVQPPHL RPSPPTQVFH AQQPKQGGAA VGPQPPAPRP  120
KVRARRGQAT DPHSIAERLR RERIAERMRA LQELVPNTNK TDRAAMLDEI LDYVKFLRLQ  180
VKVLSMSRLG GAGAVAQLVA DIPLSVKGEA SDSGSKQQIW EKWSTDGTER QVAKLMEEDI  240
GAAMQFLQSK ALCMMPISLA MAIYDTQHSQ DGQPVKPEPN TPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.251620.0callus| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG393400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734110.0EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152044.10.0uncharacterized protein LOC100285681
SwissprotO227682e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLB6U8460.0B6U846_MAIZE; BHLH transcription factor
STRINGPavir.J04249.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.38e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]