PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG379100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 539aa    MW: 57248.3 Da    PI: 7.0939
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG379100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31125178255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Pavir.9NG379100.1.p 125 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 178
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.601121181IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-29121179IPR009057Homeodomain-like
SuperFamilySSF466895.38E-14124179IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22125180IPR006447Myb domain, plants
PfamPF002499.4E-9126177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MRGGKTGGGM GEVKEKVVME DGEKRSSEPP AVLDLNEGFS SEGCDGGEIG EDADDDNEEE  60
EDIDDEDGST SEVAGAGRSS SSNSSSTNHN SGSNNKDHDM NSSSKGEGGG DRAQTVRQYN  120
RSKLPRLRWT PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK  180
LDQSGHERAS VSSVFSPMDF HMRRGDHPFH DMFFQRAAGS AISSSLLHNG GFIGSRSAVV  240
SPEASRLYGL LHRRLPTMQT FDFKNYSNLR NQEWTFSQHA VAAARAGTTN DHGPAKGIIH  300
DMIFRKDGKP TSHLFDVRDA IASNRTLSAA AGAADHGRRV GSSDWIGSSS RPLSRTMSAA  360
ASTGFALGSL HPLSRGRAST GSNGYHPNGD ANTTSSEPLV TKKALGSRLE EHLEPKNPSK  420
VIGEMCTGTA AKRTKASMED NGGMPDLQLS LSPNVGGDSD KQAKKRRILS IALSEQEVDS  480
DKMLPLSLSL SLRGGDSGGE GSGGDAGRLE AAIGSSSSKK AALGLSTLDL TMSIKALE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128GGKTGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG379100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432230.0AC243223.1 Panicum virgatum clone PV_ABa006-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812252.10.0uncharacterized protein LOC112889712
TrEMBLA0A2T7DXS00.0A0A2T7DXS0_9POAL; Uncharacterized protein
STRINGPavir.Db01175.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-37G2-like family protein