PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG377600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 32349.3 Da PI: 4.7579 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.7e-19 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k Pavir.9NG377600.1.p 69 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 122 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.7 | 2e-40 | 68 | 160 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L++++++L++e Pavir.9NG377600.1.p 68 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFAALRARHDALRAECDALRRDKDALAAE 157 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 ++e Pavir.9NG377600.1.p 158 IRE 160 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-19 | 51 | 125 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.38E-18 | 61 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.471 | 64 | 124 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-19 | 67 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.52E-16 | 69 | 125 | No hit | No description |
Pfam | PF00046 | 3.5E-16 | 69 | 122 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.5E-15 | 124 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MKRPTSRGSS MVSQATTDQQ EDSCRYMERH GVDGDGTAAA DRDDMEAGAY DEEDDDEELA 60 GSRGGLGEKK RRLAADQVRA LERSFEVDNK LDPERKARIA RDLSLHPRQV AVWFQNRRAR 120 WKTKQIERDF AALRARHDAL RAECDALRRD KDALAAEIRE LREKVERQMD VKLESAEEML 180 PVAAGTAAAA AAVYKDGSTD SDSSAVFNEE ASPYSGTAFD HQHQHQLHPS FTGFTSFLAS 240 SSSLSSSLPT SLYHGVSHLD QEADGFLSAA AADGFFAEAE QGAAGLGSWY GGEGW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 124 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17819 | 0.0 | callus| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG377600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042027 | 0.0 | BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds. | |||
GenBank | KJ727556 | 0.0 | KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792352.1 | 1e-171 | homeobox-leucine zipper protein HOX8-like isoform X1 | ||||
Swissprot | Q338Z7 | 1e-93 | HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8 | ||||
TrEMBL | A0A3L6SDJ8 | 1e-173 | A0A3L6SDJ8_PANMI; Homeobox-leucine zipper protein HOX8-like isoform X1 | ||||
STRING | Pavir.J35191.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 8e-28 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG377600.1.p |
Publications ? help Back to Top | |||
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