PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG370600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 315aa    MW: 34667.8 Da    PI: 4.9167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG370600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-10150193755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ErrRR+++   f++L +++P a     +K +K++ L  +++Y+++L+
  Pavir.9NG370600.1.p 150 LGERRRREKMHLQFATLASIIPDA-----TKRDKVSLLGSTIDYVHHLR 193
                          56**********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.49E-9136197No hitNo description
PROSITE profilePS5088813.611143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12147203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-13148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-8148192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNSSSANHQW LEELENEDLG ELDFIDPLTM QQLAESLADE LSDQPTQEQQ VQLDQRQQPM  60
YPTGFSFLGD ISKSYVVAEG FPTTTRAISV GGGDSMFSFT DGMSKQLSFS SPERKQERDA  120
SVTAGRLGAP SPVETKGRRR ASSSVHEHVL GERRRREKMH LQFATLASII PDATKRDKVS  180
LLGSTIDYVH HLRSRLKALQ DEQFQSSGST AESPPLDARC CIGSEDDGEA SQKIEADVRG  240
KTVLLRVVCR EKKGVLIMVL KELEKQGLSI TSTNVLQLAE SLLNITVTAQ IEDGSYSTAV  300
ELVNNLNSAL RNFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137155RRRASSSVHEHVLGERRRR
2151156ERRRRE
3152157RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG370600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796991.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A2T7C9140.0A0A2T7C914_9POAL; Uncharacterized protein
STRINGPavir.Ib02672.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-22bHLH family protein