PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG366600.10.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 263aa MW: 29399.6 Da PI: 8.3404

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG366600.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.9	2.1e-08	66	110	8	52
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r NR A r++R++Kka ++ Lee+v L a N++L k+l++ Pavir.9NG366600.10.p 66 KRPSGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNH 110 56667**********************************999874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-12	57	127	No hit	No description
SMART	SM00338	6.9E-7	59	126	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.7E-14	62	116	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.97E-8	63	110	No hit	No description
CDD	cd14686	8.93E-11	71	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDSYFDDIIK DTEHHACTHT HTCNPPVHDL SHTHTCVHVH TKIVAASPDA AETAESPSEN 60 NNASKKRPSG NRAAVRKYRE KKKAHTASLE EEVVHLRALN QQLMKKLQNH AALEAEVARL 120 RCLLVDIRGR IEGEIGAFPY QRPVKNIDLV SSVDQGRFLG AAQVANSCDF RCNDQMYCNP 180 GMQGAMVLRC WDKVPVMSQI SNAWELQNLD PQSFLFVGVW IPYRLAAYQM LKRSTRPLTV 240 ITVSLQTVGL CLPHPRNQAI NV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.42493	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG366600.10.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966469.1	1e-130	basic leucine zipper 23
Swissprot	Q8GTS2	8e-62	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	K3XYU9	1e-128	K3XYU9_SETIT; Uncharacterized protein
STRING	Pavir.J25286.1.p	1e-178	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4175	35	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	5e-54	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG366600.10.p

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]