PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG331300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24859.5 Da PI: 9.8672 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 129 | 177 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rWT+ E +llv++v ++G g+W+ ++ Rt ++k++w+++l Pavir.9NG331300.1.p 129 SRWTAKEVKLLVQGVSKFGVGRWSELKKKYFktSIRTSVNLKDKWRNLL 177 59*************************99998878************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.767 | 123 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-15 | 125 | 206 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-7 | 127 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-12 | 129 | 178 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-7 | 130 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 9.82E-20 | 130 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEQPEIKFCS PEMEQTGLFW APVQEEDQGL DGLLGDLQFG LASGTACDLQ MENYRARDDD 60 ALFVLQLLED ADLDEWLSGG LHQSPVGDTL SHHQMLGRKS GRRGMRKRRI SPWGTLVFEG 120 KYITRKNNSR WTAKEVKLLV QGVSKFGVGR WSELKKKYFK TSIRTSVNLK DKWRNLLRAY 180 QENVQKYTLL DLEPPLVEQI RKLAAKHPYP KRRHS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG331300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797447.1 | 1e-142 | uncharacterized protein LOC112877369 | ||||
TrEMBL | A0A2S3ILU9 | 1e-141 | A0A2S3ILU9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01842.1.p | 1e-159 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 4e-17 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG331300.1.p |