PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG327600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24203.8 Da PI: 10.3194 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.1e-09 | 125 | 171 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 WT++E lvd+v + G g+W+++ r Rt+ ++k++w+++ Pavir.9NG327600.1.p 125 HWTKDEMIALVDGVSRKGIGRWSKVKRVYFstSIRTPVHLKDKWRNL 171 6**************************9999989***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.415 | 118 | 176 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 119 | 174 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.45E-13 | 120 | 177 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-5 | 122 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-5 | 125 | 171 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.11E-17 | 126 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MEDEMDLEQL CSGPRNEKNL HECLGVAGVF GGYSFQMESP FHSLNVLDGE AADEETIIDD 60 FDIKDYVDPS MLGCFFPSAG LGHGRRGPRR KSISARVEVG ELFGSQYPRT SGGGKGSRSR 120 KNNDHWTKDE MIALVDGVSR KGIGRWSKVK RVYFSTSIRT PVHLKDKWRN LVRACKAKSA 180 SKKKVKVQKA TEMIVQRFRR QILALEAMHL GKKKK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG327600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2S3ILW2 | 8e-86 | A0A2S3ILW2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01844.1.p | 1e-126 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-11 | TRF-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG327600.1.p |