PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG325000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 323aa    MW: 34551.2 Da    PI: 5.1072
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG325000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.25e-2784171271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirw 69 
                          ++++Lr+++++   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w
  Pavir.9NG325000.1.p  84 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQW 169
                          789********...*****999************************************************************.******* PP

              E2F_TDP  70 kg 71 
                          +g
  Pavir.9NG325000.1.p 170 RG 171
                          98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-4479177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.3E-3883171IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.8E-2585171IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-1986172IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.43E-35154261IPR014889Transcription factor DP, C-terminal
SMARTSM011387.9E-62178320IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.8E-33180270No hitNo description
PfamPF087811.3E-35181294IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVSGAGPSGG PANSASTGAG GGSPSDRGGP APSASASVST PASESTVARR LNGLDLQADD  60
APSSQPAVSK KKKRGVRAVG PDKNGRGLRQ FSMRVCEKVE SKGRTTYNEV ADELVAEFSD  120
PNINIDSPDP DNPSAQQYDE KNIRRRVYDA LNVLMAMEII SKDKKEIQWR GLPKTSVNDI  180
EELKDLQDQY VSLQNLVQRN EQLYGSGDAP SGGVALPFIL VQTRPHATVE VEISEDMQLV  240
HFDFNSTPFE VQDDSFVLKE MGLSGKEETD GTQTPVANGG ECSSTPNNYW HQSPQPVRPR  300
GVGLGNSSPI PGILKGRVKH EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3477176193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.355530.0callus| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG325000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365660.0BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds.
GenBankBT0410800.0BT041080.1 Zea mays full-length cDNA clone ZM_BFc0172H21 mRNA, complete cds.
GenBankHQ8587670.0HQ858767.1 Zea mays clone UT1683 E2F-DP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791377.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-115DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2S3ILX80.0A0A2S3ILX8_9POAL; Uncharacterized protein
TrEMBLA0A2T7C6D90.0A0A2T7C6D9_9POAL; Uncharacterized protein
TrEMBLA0A3L6S9690.0A0A3L6S969_PANMI; Transcription factor-like protein DPB
STRINGPavir.Ia01865.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-111Transcription factor DP