PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG296900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 581aa MW: 63701.7 Da PI: 8.5926 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 15 | 116 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF Pavir.9NG296900.1.p 15 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVPGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 102 89****************************996555555..8999********************************************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 +++ +el+v+++r+ Pavir.9NG296900.1.p 103 --RTEHGELCVGIRRA 116 ..55999*******97 PP | |||||||
2 | Auxin_resp | 117.7 | 9.6e-39 | 171 | 254 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss+ ++ +Gt+++v+ +dp+rW+nS+Wr+L+ Pavir.9NG296900.1.p 171 AASLAAGGQPFEVVYYPRASTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRMSWfMGTIASVQVADPIRWSNSPWRLLQ 254 67889999**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-35 | 6 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-28 | 11 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.66E-19 | 14 | 115 | No hit | No description |
Pfam | PF02362 | 4.3E-21 | 15 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-20 | 15 | 117 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.689 | 15 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.1E-34 | 171 | 254 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.962 | 485 | 563 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
VGGDPADARD KLSSFAKTLT QSDANNGGGF SVPRYCAETI FPKLDYRADP PVQTVLAKDV 60 PGEVWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRTEHGELC VGIRRAKRVS 120 CGGMECMSGW NAPGYGAFSA FLKDEESKMM KGPGGYMRGR RKVKIADVVE AASLAAGGQP 180 FEVVYYPRAS TPEFVVKAAS VQNAMRNQWC PGMRFKMAFE TEDSSRMSWF MGTIASVQVA 240 DPIRWSNSPW RLLQVTWDEP DLLQNVKCVN PWLVELVSSI PPIHLGPFSP PRKKLRVPQH 300 PDFPFDSQLL NPIFHGNPLG PSNSPICCFP DNAPAGIQVA RHAQFGLPLT DHQLNKLHLG 360 LFHGGGFNRL DAITPQSRIP KGFMITSAPV KETVSCLLTI GTPQGTEKSD DRKKPHIMLF 420 GKPILTEQQM NSGGSRETFS PEVTGNSSSD GNAQKTGNVS DGSGSSICIG FPSQGRKASD 480 LGLEVGHCKV FMESEDVGRT IDLSVFGSYE ELYGQLADMF GIEKAEIMSH LRYRDAAGAV 540 KHTGEEPFSD FMKVARRLTI TEGGVGRLQK PLIEYMVERA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-56 | 15 | 279 | 158 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.21172 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG296900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795868.1 | 0.0 | auxin response factor 22-like | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | A0A2S3ILF0 | 0.0 | A0A2S3ILF0_9POAL; Auxin response factor | ||||
STRING | Pavir.Ia01695.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG296900.1.p |
Publications ? help Back to Top | |||
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