PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG282000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 34377.8 Da PI: 6.0753 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.2e-52 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+yk++PwdLp+++ +++ewyfF++rd+ky++g r+nra+ +gyWkatg+dk Pavir.9NG282000.1.p 17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKLDPWDLPERALFGTREWYFFTPRDRKYPNGLRPNRAAGNGYWKATGTDK 105 79****************************.88***************8877899*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl Pavir.9NG282000.1.p 106 PVAP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142 **99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-64 | 13 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.017 | 17 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-27 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MGVPVRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYKLDPW 60 DLPERALFGT REWYFFTPRD RKYPNGLRPN RAAGNGYWKA TGTDKPVAPR GRTLGIKKAL 120 VFYAGKAPRG VKTDWIMHEY RLADAGRAAA AKKGSLRLDD WVLCRLYNKK NEWEKMQLGK 180 ESAAGAVAKE EAMDMTTSHS HSWGETRTPE SEIVDNDPFP ELDSFPAFQD PAAAMMVPKK 240 EPQADDGNNN NAAKNSDLFV DLSYDDIQSM YSGLDMLPPP GEDFYSSLFA SPRVKGNQPA 300 GAAGLAPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-109 | 5 | 175 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.45 | 0.0 | callus| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG282000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017002 | 0.0 | KM017002.1 Miscanthus lutarioriparius NAC2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795053.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q75HE5 | 1e-166 | NAC2_ORYSJ; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2S3IGT5 | 0.0 | A0A2S3IGT5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7BZ88 | 0.0 | A0A2T7BZ88_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00158.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4414 | 30 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 2e-77 | NAC domain containing protein 102 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG282000.1.p |
Publications ? help Back to Top | |||
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