PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG279500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 376aa MW: 40672.1 Da PI: 4.675

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG279500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	28.8	3.5e-09	23	135	30	127
NAM 30 leevikevdiykvePwdLpk..........kvka...eekewyfFskrdkkyatgk...rknratk..sgyWkatgkdkevlskkgelvg 101 ++++++vd++++ P dL + + + ++ wyf+++++ k+a+gk +++ra+ ++ W++ + k+v+ ++ Pavir.9NG279500.1.p 23 DSTFVHRVDVCSAAPADLVAnlepapgtnlA--GddgYSSVWYFYCPKRYKNAQGKpsgHRQRAIGggDACWHSETRPKPVKG-LAGATL 109 336799**********7447787877441..222234499*****99877555556666623557******98.333444 PP NAM 102 lkktLvfy..kgrapkgektdWvmheyr 127 + L + +g++++ ++ W+m ey Pavir.9NG279500.1.p 110 C--NLSYGrkEGSSRSFNRMGWCMTEYD 135 4..455553378999999*******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.537	1	151	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-13	22	151	IPR003441	NAC domain
Pfam	PF02365	3.6E-4	46	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MAAADDASSV ALLRGLRSGA VVDSTFVHRV DVCSAAPADL VANLEPAPGT NLAGDDGYSS 60 VWYFYCPKRY KNAQGKPSGH RQRAIGGGDA CWHSETRPKP VKGLAGATLC NLSYGRKEGS 120 SRSFNRMGWC MTEYDEEGGG DGHVLCKVYR SSSSLAKGKL KLKPSSTSTN PTSSEQAAQC 180 SSASKRKATA DHPHARPSKI SHVQACACTS SYTCVDQDFY QHVDHQLQEP LLTDDQITMP 240 VGIDYESLFL AEEEQEQVQQ QNTMVTAEVD QFQQNTLVTT AEEQQLQLNT MNGLLGDQGY 300 HEDGSCSANT QFTMDQFLEN IQFTMEELMG GPVYGEYGGC SPNTQFTMDE MFSRCCGPPT 360 AVAPMDAGFF DGLAF*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MAAADDASSV ALLRGLRSGA VVDSTFVHRV DVCSAAPADL VANLEPAPGT NLAGDDGYSS  60
VWYFYCPKRY KNAQGKPSGH RQRAIGGGDA CWHSETRPKP VKGLAGATLC NLSYGRKEGS  120
SRSFNRMGWC MTEYDEEGGG DGHVLCKVYR SSSSLAKGKL KLKPSSTSTN PTSSEQAAQC  180
SSASKRKATA DHPHARPSKI SHVQACACTS SYTCVDQDFY QHVDHQLQEP LLTDDQITMP  240
VGIDYESLFL AEEEQEQVQQ QNTMVTAEVD QFQQNTLVTT AEEQQLQLNT MNGLLGDQGY  300
HEDGSCSANT QFTMDQFLEN IQFTMEELMG GPVYGEYGGC SPNTQFTMDE MFSRCCGPPT  360
AVAPMDAGFF DGLAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG279500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463549.1	2e-49	uncharacterized protein LOC8079646
TrEMBL	A0A2S3IGW5	1e-176	A0A2S3IGW5_9POAL; Uncharacterized protein
STRING	Pavir.J34372.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Pavir.9NG279500.1.p