PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG252500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 266aa    MW: 29199.7 Da    PI: 9.4673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG252500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-15553148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd+l+++ ++++G g +W + ++t+g++R++ +c+srw++yl
  Pavir.9NG252500.1.p  5 KGKWSKEEDDLIKNHIEKYGIGhSWQALSNTLGLRRCGRSCRSRWLNYL 53
                         79*********************************************97 PP
2Myb_DNA-binding28.24.3e-0960103247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g++T+ E+ l+ +   + G+  W+  a +++ gRt+  +k++w++ 
  Pavir.9NG252500.1.p  60 GNFTPAEERLICEMYSERGSC-WSVMAPKLP-GRTDLAIKNYWNST 103
                          89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.251157IPR017930Myb domain
SuperFamilySSF466893.67E-253100IPR009057Homeodomain-like
SMARTSM007171.2E-10455IPR001005SANT/Myb domain
PfamPF002491.1E-12553IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-20660IPR009057Homeodomain-like
SMARTSM007173.3E-958106IPR001005SANT/Myb domain
PROSITE profilePS5129413.06158108IPR017930Myb domain
PfamPF002495.4E-860103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2061107IPR009057Homeodomain-like
CDDcd001671.14E-661104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMKKKGKWSK EEDDLIKNHI EKYGIGHSWQ ALSNTLGLRR CGRSCRSRWL NYLRPGLKHG  60
NFTPAEERLI CEMYSERGSC WSVMAPKLPG RTDLAIKNYW NSTLKKKFPV ARPSAAAAFR  120
RRNRPACSTS SDAGTPARDL QLVSYSSEES STPGSSPAKS VLAGPTPVQA VQPLVPFVAA  180
QPIVAVPISG PVKIEQKHAV VSLPRLGKTP PPPPPPACDQ TGERVMDIVC APMSPVPLSI  240
MEPDELACIY QFDDIASFLP WFDHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-22510827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG252500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661280.11e-139transcription factor RAX2
TrEMBLA0A2S3ILL51e-151A0A2S3ILL5_9POAL; Uncharacterized protein
STRINGPavir.J36491.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-31myb domain protein 87