PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG250100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 662aa    MW: 76434.2 Da    PI: 8.1652
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG250100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.94e-2426117190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+YA + GFsvr+s+ +    ++e t r+fvCs+eg++e ++ k ++k+rr+r+ tr+gC+ k+++ +++ +g+w+v+++  +HnH+
  Pavir.9NG250100.1.p  26 QFYNAYALKKGFSVRRSYAEWDVGHNELTLRKFVCSREGFHEAKHMKrEDKQRRPRNITRVGCHTKFVIAQQRdTGQWYVKDFIDDHNHP 115
                          6*******************9999999**************9998775788999***************99999**************** PP

                 FAR1  89 la 90 
                          la
  Pavir.9NG250100.1.p 116 LA 117
                          96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2226117IPR004330FAR1 DNA binding domain
PfamPF105511.5E-25227308IPR018289MULE transposase domain
PROSITE profilePS509669.248480518IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MADLESLLEY NQIVSQMFDS EVQGFQFYNA YALKKGFSVR RSYAEWDVGH NELTLRKFVC  60
SREGFHEAKH MKREDKQRRP RNITRVGCHT KFVIAQQRDT GQWYVKDFID DHNHPLALED  120
LSCLLRSHRR INDEQKADIL EMEISGIRKH QIFEIQEIQY GGYDKVGYTQ RDLYNFCHRH  180
KQGTISAGDA QTVIRHLRER ERRDADFFFR SMTDEQGHLH LQNKSVQPAF VPFVGVNHHK  240
CTVLFGCGII SHENKNSYEW LLRTFSDTNI QKHPISVITD GDLAMQRAIR IVWPNSSHRL  300
CRWHIEQNLV RNVHNDKLKE AFRVFMYDCC SIQEIDRKWL AFLMYEVRKI WCAAYHMGKC  360
YLGLWSNQRS ESMNARLQMQ LDGKMTMLEM VEHYETCLSR VRRNEADDDI IALQSEPFTA  420
PDASILEIDV KKRFTTNVFV LVQFSIKAAT KCHLVEILDG DDTEEYIIGR KDKGDIMIYV  480
KCEFNEEGNL KGISCSCRKL ESLGTSCSHI FFVLGHRGER KLPDCCVLER WTMVAKSAFP  540
PIRTSTMYEY SATLLRYRDL RNISRAASFS ASRSTEAYEL LRGALQEAAT ILPNVGPNEG  600
NMYGPVLPQA SEADCEDIRD VLDPMHVPGR GAPKKKLKSS TATASKSKTK CSLCKVAGHN  660
R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1632638PKKKLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG250100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.Db01105.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-60FAR1-related sequence 5