PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG210900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 418aa MW: 46184.2 Da PI: 9.6302 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 110 | 153 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT e+d++l ++ +++G++ W+ Iar+++ gRt+kqc++rw + Pavir.9NG210900.1.p 110 KWTYEDDKKLRELMERHGNKAWSIIAREFP-GRTGKQCRERWINN 153 8*****************************.***********986 PP | |||||||
2 | Myb_DNA-binding | 44.9 | 2.6e-14 | 162 | 202 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+ E +llv+++k+lG++ W++ ar+++ gR+++++k+ w+ Pavir.9NG210900.1.p 162 AWTETELLLLVECHKKLGKK-WSKMARRIP-GRSENSIKNQWY 202 8*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.221 | 103 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-14 | 107 | 156 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.95E-26 | 109 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.27E-14 | 110 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-23 | 110 | 158 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.0E-17 | 111 | 167 | No hit | No description |
PROSITE profile | PS51294 | 12.168 | 159 | 209 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-12 | 159 | 207 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-16 | 159 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-10 | 162 | 202 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 418 aa Download sequence Send to blast |
MAVHLGEKRS MFHKMFEKRY KYALGQQDVG TMHGVLAHEA VGQATNFGVS DYGTHWQGAS 60 GFIGRGGDPI QEAPIGEYHG QMIGSMALQN EAGKAYAEAS FVVNNATGRK WTYEDDKKLR 120 ELMERHGNKA WSIIAREFPG RTGKQCRERW INNLDPKIKT TAWTETELLL LVECHKKLGK 180 KWSKMARRIP GRSENSIKNQ WYAAERSLKA KRKNRKGDAR PGIIEDYMRS LKGKGKNKVK 240 KVTMPFPGSN FAASPQVLES GDKPLPPPSL SAPFLGLNIN VGDHFALEAM YDDPVFTGKH 300 QPFAYPQDQE SGYLSSPYEL APGNPFAEDR QAGGYYNQLQ FHQLPTSVQQ EQAFSNYRVA 360 EDTNQVFAGR YYREAMAAAA AATTPAGSAD IVAKRLAMLA IADEGPSLNS PPAGGCF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-30 | 111 | 206 | 7 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 3e-30 | 111 | 206 | 7 | 102 | C-Myb DNA-Binding Domain |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG210900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012704394.1 | 1e-137 | transcription factor MYB62-like | ||||
TrEMBL | A0A3L6THU6 | 0.0 | A0A3L6THU6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia01307.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP32205 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 8e-33 | myb domain protein 98 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG210900.1.p |