PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG207100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 43593.8 Da PI: 6.125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.3e-10 | 326 | 366 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Pavir.9NG207100.1.p 326 KKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 366 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-14 | 314 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-11 | 314 | 370 | No hit | No description |
PROSITE profile | PS50888 | 15.205 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 316 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 322 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 326 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MCTSSRVPVN TWRAAITTVH PQPGGSISLM MIMFLTSATL VGFFNLVFSI NTPLTAHIFP 60 SPSTSNSTAQ ASYHFYYLSH PLLIAMESGG VIAEAGWSVV GMASQAEESE IMEQLLGTFP 120 SNCEEGDQEF PWPIQASNAS YSHCNASSST YSSTNSNGSG SPTFVVPSEY GGYYLSNSNE 180 ALHLNFCTAP MHLHMDQEQG AAQFMDTILN PHGSSDSSGE DLGDSGMNLL DSIGASVKRK 240 HLEQGNLDGP TRSRKWARKS DSKRVKKTIQ RELQDGGVAA NGQSSSCCTF ENDSNAFRGP 300 PVAANLNCKV QADRRSATES QSLYAKKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVQ 360 YVKFLQLQIK LLSSDEMWMY APIAYNGMNI GIDLNLSQH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG207100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797849.1 | 0.0 | transcription factor bHLH139-like | ||||
TrEMBL | A0A2S3IKN8 | 0.0 | A0A2S3IKN8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01481.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4310 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG207100.1.p |