PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG205400.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 423aa    MW: 47325.8 Da    PI: 10.2542
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG205400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-141442251597
                          -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           lv++k++a e+  +  + + +tle +   ++W  +l +r ++ +y+l + Wk+Fv++n+Lk++D+++F+ ++ ++f+  v+++
  Pavir.9NG205400.4.p 144 ALVISKSYAVEYFPQ--RAQIITLERPGCkKKWHPRLHIRPNRVGYILCGHWKNFVRDNKLKTNDICIFQPIKGKRFRVIVHLL 225
                          59**********755..55589999966569******99999999*************************99989999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
Gene3DG3DSA:2.40.330.107.0E-19120222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20123225IPR015300DNA-binding pseudobarrel domain
CDDcd100178.88E-18127223No hitNo description
SMARTSM010196.2E-7129228IPR003340B3 DNA binding domain
PROSITE profilePS5086310.616130228IPR003340B3 DNA binding domain
PfamPF023623.3E-13143225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-9316419IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-8318419IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.056324419IPR003340B3 DNA binding domain
PROSITE profilePS508636.964366419IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MKCLLSHANS NRKHGMTIIQ IFGSCCCNKD SSCASTKNGL MVREGSANSI DTSRGSSDHA  60
TQSSTNETHE SLSSSEESDS QSESQPSQLG HCNTFSKLWF IPNKRDLNPE QGKKIDDLVK  120
KIQPQFPVLV VRMKKSSAKP GNPALVISKS YAVEYFPQRA QIITLERPGC KKKWHPRLHI  180
RPNRVGYILC GHWKNFVRDN KLKTNDICIF QPIKGKRFRV IVHLLGEAST HSRARRPRDS  240
NNGSARKQSS AALVHENSSS RDKSPQLNLR LRHRVAKETC ASDDPGEPSR PPAFVVLRHT  300
SLTPAQEKTV GEKVKAIQSD VPVFVANVSE EIVGDNGTFS LDFASRYATP HLPDGKQTPT  360
LSQDGWRKAW RTKMLNGRML PGELREFATD NRMRTGDLCL FEPMKEERLA MAVHIIRSEQ  420
YS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG205400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797721.10.0B3 domain-containing protein Os03g0619800-like
TrEMBLA0A2T7C3P50.0A0A2T7C3P5_9POAL; Uncharacterized protein
STRINGPavir.Ia01275.1.p0.0(Panicum virgatum)