PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG205400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 449aa    MW: 50091.8 Da    PI: 9.9326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG205400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.42.9e-141702511597
                          -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           lv++k++a e+  +  + + +tle +   ++W  +l +r ++ +y+l + Wk+Fv++n+Lk++D+++F+ ++ ++f+  v+++
  Pavir.9NG205400.1.p 170 ALVISKSYAVEYFPQ--RAQIITLERPGCkKKWHPRLHIRPNRVGYILCGHWKNFVRDNKLKTNDICIFQPIKGKRFRVIVHLL 251
                          59**********755..55589999966569******99999999*************************99989999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-19146248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20149251IPR015300DNA-binding pseudobarrel domain
CDDcd100178.27E-18153249No hitNo description
SMARTSM010196.2E-7155254IPR003340B3 DNA binding domain
PROSITE profilePS5086310.616156254IPR003340B3 DNA binding domain
PfamPF023623.7E-13169251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-9342445IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-8344445IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.056350445IPR003340B3 DNA binding domain
PROSITE profilePS508636.964392445IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAGRGCPNNK SCHCYKSCVD HADGTMKCLL SHANSNRKHG MTIIQIFGSC CCNKDSSCAS  60
TKNGLMVREG SANSIDTSRG SSDHATQSST NETHESLSSS EESEDSQSES QPSQLGHCNT  120
FSKLWFIPNK RDLNPEQGKK IDDLVKKIQP QFPVLVVRMK KSSAKPGNPA LVISKSYAVE  180
YFPQRAQIIT LERPGCKKKW HPRLHIRPNR VGYILCGHWK NFVRDNKLKT NDICIFQPIK  240
GKRFRVIVHL LGEASTHSRA RRPRDSNNGS ARKQSSAALV HENSSSRDKS PQLNLRLRHR  300
VAKETCASDD PGEPSRPPAF VVLRHTSLTP AQEKTVGEKV KAIQSDVPVF VANVSEEIVG  360
DNGTFSLDFA SRYATPHLPD GKQTPTLSQD GWRKAWRTKM LNGRMLPGEL REFATDNRMR  420
TGDLCLFEPM KEERLAMAVH IIRSEQYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG205400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797721.10.0B3 domain-containing protein Os03g0619800-like
TrEMBLA0A2T7C3P50.0A0A2T7C3P5_9POAL; Uncharacterized protein
STRINGPavir.Ia01275.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2959434