PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG196200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 383aa    MW: 41464.4 Da    PI: 10.46
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG196200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.62.1e-31101154255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  Pavir.9NG196200.1.p 101 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVQDLTLAHVKSHLQMYRT 154
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-1598154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-2898154IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-23101154IPR006447Myb domain, plants
PfamPF002493.1E-7102153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAATDLSLHI SPPSPPDAGS SGGHETQGFF AKPKLCLGLE TATATQQQDG QCCDVQHQQR  60
LHQPSQIQRF KKSSSSAALS GGTTRSGNNG SGGRKRSSRA PRMRWTTALH AHFVHAVELL  120
GGHERATPKS VLELMNVQDL TLAHVKSHLQ MYRTVKGTTA DDRSCAAGHV QMRDMGFLQR  180
GCCEVNGFEA FNHSTSNTRH RMLASSAAGA SPAGKQEVAW CLRPPLGQQS GLPLPLPCPY  240
LMSAHHNRYL LSQDHHQAWR RGAQQDAASR VLGQDNTARR LHAGHADAAT RRSSWSAGVA  300
SRWSSSSTTA PSSSTRRSST EQACWMMNKQ QQQQLAPSSR VAAPNLEMSL GRQGWHHNLQ  360
DQQQRSGEPA AAAKELTLLK CL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-16102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-16102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-16102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-16102156357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG196200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9444001e-117EU944400.1 Zea mays clone 217622 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982402.10.0uncharacterized protein LOC101779847
TrEMBLA0A368SHH60.0A0A368SHH6_SETIT; Uncharacterized protein
STRINGPavir.Ia01264.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-32G2-like family protein