PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG189800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 36323.6 Da PI: 6.7281 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.6 | 4.5e-11 | 2 | 33 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 v+++G + W++I+r+++ gR +kqc++rw ++l Pavir.9NG189800.2.p 2 VEMYGDRKWAAISRHLP-GRIGKQCRERWTNHL 33 99***************.************996 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 43 | 83 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+e+d l++a+k +G++ W++Iar++ gR+++++k++w+ Pavir.9NG189800.2.p 43 IWTEEDDMNLIEAHKVYGNR-WSLIARKLE-GRSENSVKNHWN 83 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.82E-9 | 1 | 33 | No hit | No description |
PROSITE profile | PS51294 | 22.629 | 1 | 37 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-14 | 1 | 40 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.04 | 1 | 35 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-9 | 2 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.87E-24 | 13 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.535 | 38 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 40 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-13 | 44 | 86 | No hit | No description |
Pfam | PF00249 | 3.2E-14 | 44 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-16 | 44 | 84 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MVEMYGDRKW AAISRHLPGR IGKQCRERWT NHLRPEIDKA KNIWTEEDDM NLIEAHKVYG 60 NRWSLIARKL EGRSENSVKN HWNATKRSLK AKRRLKKKKN AEAPPGQQWS ILEEYIRSLR 120 PDELAAAPPA PSDDSPPSSY NNVGYGGEVV SPPAAPAPAG GGFDPAAMRL YLSAAAAGSS 180 SSAVNNLAAM NRNPNMAAQP YLGLDLNAYY YGAPLQQQTP PPTPMMMTMM GQDQHQAAAS 240 YSADNLMMTY PFVDHLQAWH SPAPNADAYA ATNANAGPHY SYYSDAGAGP SAAAAAAPAP 300 ANPQDDVDVV QMASREFQLN PSDEEVTLNL AGFV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 1 | 85 | 21 | 103 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG189800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791584.1 | 1e-124 | transcription factor CSA-like | ||||
TrEMBL | A0A3L6TP14 | 1e-134 | A0A3L6TP14_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J13941.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 9e-33 | myb domain protein 98 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG189800.2.p |