PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG188400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 624aa    MW: 67835.9 Da    PI: 6.5963
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG188400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-183087457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pavir.9NG188400.1.p 30 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87
                         6789****************************************************97 PP
2START174.94.8e-551783852204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g
  Pavir.9NG188400.1.p 178 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGngG 266
                          68999*****************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+++
  Pavir.9NG188400.1.p 267 TIELIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAW 356
                          ***************999****************************9999999************************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s  + ++kt+ a+l++ +
  Pavir.9NG188400.1.p 357 SVPEVLRPLYESPKILAQKTTIAALRHIR 385
                          ************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4352488IPR001356Homeobox domain
SMARTSM003892.6E-152692IPR001356Homeobox domain
SuperFamilySSF466894.71E-172891IPR009057Homeodomain-like
CDDcd000861.72E-162989No hitNo description
PfamPF000463.4E-163087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-183187IPR009057Homeodomain-like
CDDcd146861.19E-681120No hitNo description
PROSITE profilePS5084826.956168368IPR002913START domain
CDDcd088756.72E-72172388No hitNo description
Gene3DG3DSA:3.30.530.209.5E-25176360IPR023393START-like domain
SMARTSM002348.2E-47177387IPR002913START domain
SuperFamilySSF559615.77E-39178388No hitNo description
PfamPF018528.6E-53178385IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAAAMVVAGG GKDRSSPGGG GAPQVDTGKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI  60
RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS  120
RLVYENGYMR QQLHNPSVAT TDTSCESVVT SGQHHQQQNA AAPRPQRDAN NPAGLLAIAE  180
ETLAEFLSKA TGTAVDWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI  240
LKDRPSWYRD CRCVDILHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS  300
LVICERSLTQ STGGPSGPNT PNFVRAEVLP SGYLIRPCEG GGSMIHIVDH VDLDAWSVPE  360
VLRPLYESPK ILAQKTTIAA LRHIRQIAHE SSGEMPYGGG RQPAVLRTFS QRLSRGFNDA  420
VNGFPDDGWS LMSSDGSEDV TIAINSSPNK LVGSHVNSSQ LFSAIEGGIL CAKASMLLQN  480
VPPALLVRFL REHRSEWADP GVDAYSAAAL RASPYAVPGL RASGFMGSQV ILPLAHTLEH  540
EEFLEVIRLE GHSLCHDEVV LSRDMYLLQL CSGVDENAAG ACAQLVFAPI DESFADDAPL  600
LPQASVSYHL DAKDGSTIRH THT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.32750.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG188400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982339.10.0homeobox-leucine zipper protein HOX32
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
TrEMBLA0A3L6TJE30.0A0A3L6TJE3_PANMI; Homeobox-leucine zipper protein HOX32
STRINGPavir.Ia01087.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein