PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG180300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 209aa MW: 23417.9 Da PI: 4.7843 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 64.5 | 1.9e-20 | 33 | 88 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55 l+W+ +LH Fv+av+ GG+++A P k+ +e+m+v gLt++++kSHLQ+YR Pavir.9NG180300.1.p 33 YLQWSDDLHMIFVKAVAYQGGPHEAKPtalKETMEAMGVRGLTIQNIKSHLQRYRE 88 589************************66666788899*****************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.58E-10 | 28 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-19 | 30 | 89 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-15 | 31 | 89 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSTNKPTQKN DVTIMSSMLA CRIICAMQPT KSYLQWSDDL HMIFVKAVAY QGGPHEAKPT 60 ALKETMEAMG VRGLTIQNIK SHLQRYREKC ELGAEAPAVK VPGTTSLCKE ALNQASKILM 120 DTDAVMLEME IVNNFLMDDI EMVDNNFSVD RVQMMEKELM DAIQVVYSHN DNEANFSCPQ 180 LIEHNSQHPQ TVIDEYIADL ANYAFGHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG180300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797593.1 | 7e-99 | myb family transcription factor PHL12-like | ||||
Refseq | XP_025797594.1 | 7e-99 | myb family transcription factor PHL12-like | ||||
TrEMBL | A0A1E5WBP8 | 1e-104 | A0A1E5WBP8_9POAL; Uncharacterized protein | ||||
STRING | Sb01g013080.1 | 6e-86 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15499 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12730.1 | 3e-15 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG180300.1.p |