PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG173900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 509aa    MW: 53004.7 Da    PI: 6.5814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG173900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.5e-17313359455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Pavir.9NG173900.1.p 313 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 359
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-21307371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-17312363No hitNo description
PfamPF000103.7E-14313359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-21313367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MNQFVPDWNS MGDTSRPLGD DDDLIELLWC NGHVIMQSQN NRKLPPRPEK PAGAAAPAPA  60
SAAQDDEAGL WFPFALADSL DKDIFSEFFC EAPAAAAPVP ATPGVEDGKP ACRDVPMEDD  120
SRRGGACAVS EAPSDLMPPP KSGPVSGSRQ QTMSLATDGG DNAGDLSDLV RAGSAGKASA  180
EAGASSMLST IGSSICGSNQ VLVQRAVSAA GRVACGGGCS GSALPSAMGS ANANARGRGN  240
EATSGRSNYC FGTATTTTTE PTSTSNRSSK RKRLDTEDSE SPSEDAESES AAMLARKPPQ  300
KLTMARRSRA AEVHNLSERR RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL  360
QVQMMWMGSG IAAPPVMFPG VHQYLPRMGV GMGAAAMPSM PRMPFMAPQP VVPNAPVHNP  420
VPLSPAAYRG HMPAVGITEP YAHYLGVNHL QPTPSQHFAQ GVGYYPLGAK AAVQQSPALH  480
HVPGGGMPAV AAAPGGLPPE TAPSRGPG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.419980.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG173900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566450.0EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794697.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A2T7C3N40.0A0A2T7C3N4_9POAL; Uncharacterized protein
STRINGPavir.Ia01219.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-34phytochrome interacting factor 3