PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG165900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 367aa    MW: 38946.7 Da    PI: 5.8215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG165900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.4e-15170216455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Pavir.9NG165900.2.p 170 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKELQ 216
                          699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.05166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12170216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17170225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.88E-16171220No hitNo description
SMARTSM003533.3E-16172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.759283359IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEDLGLFKQ WAMDTLRHAA ISNNDCSEAT TFPSLQALRE ASHAAEMVQE LISAAPASSW  60
SSGDTTDGSS GGNNPPSAAM DHDAWPPTPN SARRAPAAPT LARSSSGTNL PVSWNFGTAS  120
ALPGSDGMLP AEAEAAPTHR LPDIVCGSPP TRRAGVKGAA GSMSTPYAQD HIIAERKRRE  180
KINQRFIELS TVIPGLKKMD KATILSDATK YVKELQEKLR DLEAGGSNGR SIVETVVLVK  240
RPCRHDAAKP DEDGSPLSAS SAAPAARKQL PEIEARFSDK SVMVRINCED GKGVVVKVLT  300
EVEELRLSIT HANVMPFPAG TLIITITAKV EEGFTVNAED IVGRLNSALL HQHHSSCNST  360
DEETGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.198681e-40stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG165900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795849.10.0transcription factor MYC2-like isoform X1
RefseqXP_025795850.10.0transcription factor NAI1-like isoform X2
TrEMBLA0A2S3IJF20.0A0A2S3IJF2_9POAL; Uncharacterized protein
STRINGPavir.Ia01004.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-38bHLH family protein