PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG165900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 38946.7 Da PI: 5.8215 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47 | 4.4e-15 | 170 | 216 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq Pavir.9NG165900.1.p 170 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKELQ 216 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.05 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-18 | 170 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-12 | 170 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-17 | 170 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.88E-16 | 171 | 220 | No hit | No description |
SMART | SM00353 | 3.3E-16 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.759 | 283 | 359 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEEDLGLFKQ WAMDTLRHAA ISNNDCSEAT TFPSLQALRE ASHAAEMVQE LISAAPASSW 60 SSGDTTDGSS GGNNPPSAAM DHDAWPPTPN SARRAPAAPT LARSSSGTNL PVSWNFGTAS 120 ALPGSDGMLP AEAEAAPTHR LPDIVCGSPP TRRAGVKGAA GSMSTPYAQD HIIAERKRRE 180 KINQRFIELS TVIPGLKKMD KATILSDATK YVKELQEKLR DLEAGGSNGR SIVETVVLVK 240 RPCRHDAAKP DEDGSPLSAS SAAPAARKQL PEIEARFSDK SVMVRINCED GKGVVVKVLT 300 EVEELRLSIT HANVMPFPAG TLIITITAKV EEGFTVNAED IVGRLNSALL HQHHSSCNST 360 DEETGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 179 | ERKRRE |
2 | 175 | 180 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.19868 | 1e-40 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG165900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795849.1 | 0.0 | transcription factor MYC2-like isoform X1 | ||||
Refseq | XP_025795850.1 | 0.0 | transcription factor NAI1-like isoform X2 | ||||
TrEMBL | A0A2S3IJF2 | 0.0 | A0A2S3IJF2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01004.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 9e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG165900.1.p |