PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG165600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 372aa MW: 38744.4 Da PI: 6.8519 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.5 | 6.3e-15 | 184 | 231 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+++Lq Pavir.9NG165600.1.p 184 QDHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVRDLQ 231 5699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.012 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-18 | 185 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-12 | 185 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-17 | 185 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.09E-16 | 186 | 235 | No hit | No description |
SMART | SM00353 | 1.6E-15 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MEDSTQFMQW ALSTLQHEQP PPGTPAPAAG AYDDGCDTTV SSIPVLRYSA SVESMLPGEP 60 PAREGQRATN SWSSVDTDSG SGGGGLSATA WSPPQHSAMC AATAPGSCSS GTNQPVSWDF 120 HSASAQLMKE APQPYSAAAA LQAESGGGGG SGVAVPKMTQ HVSPPARRAS AKISASSSSA 180 PYSQDHIIAE RKRREKINQR FIELSTVIPG LKKMDKATIL SDATRYVRDL QEKLRALQKD 240 GGGRGMQSAV LASKKPRIAA AADDDENGGA HPNATGGGAA ATRNNALPEI EVRISEDNVV 300 MVRIHCREAK GVVVRLLAEV EGLHLSITHT NVVQFSASVL IINIMAKVEQ GFNSTADDIV 360 GTLNAALACH K* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 194 | ERKRRE |
2 | 190 | 195 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.19868 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG165600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107190 | 4e-49 | AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence. | |||
GenBank | HQ858862 | 4e-49 | HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792499.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A2S3IJE8 | 0.0 | A0A2S3IJE8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01059.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG165600.1.p |