PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG161800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TALE | ||||||||
Protein Properties | Length: 262aa MW: 29353 Da PI: 6.0606 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.9 | 4.1e-09 | 179 | 212 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps+ e++ LA+++gL+ +q+ +WF N+R ++ Pavir.9NG161800.1.p 179 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 212 69*****************************885 PP | |||||||
2 | ELK | 36 | 1.5e-12 | 132 | 153 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL++L++E+s Pavir.9NG161800.1.p 132 ELKNRLLNKYSGYLSNLWKELS 153 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-11 | 1 | 38 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.2E-16 | 1 | 36 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.6E-27 | 42 | 93 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.5E-22 | 48 | 91 | IPR005541 | KNOX2 |
SMART | SM01188 | 1.7E-6 | 132 | 153 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.4E-9 | 132 | 153 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.493 | 132 | 152 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.471 | 152 | 215 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-18 | 154 | 223 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-11 | 154 | 219 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.64E-13 | 155 | 215 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-26 | 157 | 216 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.1E-16 | 172 | 211 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 190 | 213 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSHPLYPALL RAFIDCRKVG APPEVVGRLS ALAGEVEMNS GDVQEQPADP ELDQFMEIYC 60 NMLVRYRQEL TRPIEEADEF FRSMEAQIDS FSLDDNGYEG GGSSSDDEQE TVDLVGLPVA 120 ETTGSPSAED KELKNRLLNK YSGYLSNLWK ELSRKKKKGK LPRDARQKLL HWWQLHYRWP 180 YPSELEKAAL AESTGLDAKQ INNWFINQRK RHWKPAPPAM VLATDYRLRP YGGGASSSSG 240 SAALRMEGQH FAGGSSYPRG P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG161800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040622 | 0.0 | BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792019.1 | 1e-172 | homeobox protein knotted-1-like 4 | ||||
Swissprot | Q75LX7 | 1e-130 | KNOS4_ORYSJ; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A2S3IJG1 | 1e-171 | A0A2S3IJG1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7C308 | 1e-171 | A0A2T7C308_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01001.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4746 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 7e-75 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG161800.1.p |