PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG159200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 359aa    MW: 38725.6 Da    PI: 7.9075
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG159200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.7e-092933252254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          ++yp+  e+ +LA+ +gL+ +q+++WF N R +
  Pavir.9NG159200.1.p 293 HPYPDDGEKLRLAMATGLSRSQISNWFINARVR 325
                          89*****************************88 PP
2BELL50.35.9e-171522141071
                 BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsa.kpYtslAlkaiSrhFrcLkdaiaeq 71 
                          akLl ll e++ r ++y  +l  v+ssFe + g g+a   Ytsl  +a++rhF +L+ ai  +
  Pavir.9NG159200.1.p 152 AKLLGLLSELESRQERYFGELGRVASSFEPALGDGAAaSAYTSLMAQAMARHFGNLRRAILRR 214
                          8**********************************86267********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-985213IPR006563POX domain
PfamPF075265.8E-2290211IPR006563POX domain
SMARTSM003891.6E-8269333IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-25274335IPR009057Homeodomain-like
SuperFamilySSF466897.7E-17275337IPR009057Homeodomain-like
CDDcd000866.61E-10280330No hitNo description
PfamPF059205.9E-17286325IPR008422Homeobox KN domain
PROSITE profilePS5007111.159288329IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVMAKQHGKG SPKRAPNEPA PRSAVAGRPS QPTAPLRLEQ CCRCDDRRRQ EDDGSSNGAG  60
PLLLTLGPLG PAADRRCSCV IAPAPATMSV LRGSRYLRPA QELLGEVVRM ANLAAGAGAE  120
DEATADKQER LDAAGHRAVR RAAMNDGDGI QAKLLGLLSE LESRQERYFG ELGRVASSFE  180
PALGDGAAAS AYTSLMAQAM ARHFGNLRRA ILRRLRLHAA AAAKRSLRAG EEGEQGDGDG  240
DEEEVTEEMV DRVARRTKLA AAARAEQAWR PIRGLPEGSV AVLRAWLFDH FLHPYPDDGE  300
KLRLAMATGL SRSQISNWFI NARVRLWKPM IEEMYKDEFS EGSAVSREDD TSGASSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16275333563Homeobox protein Meis2
4xrm_B4e-16275333563Homeobox protein Meis2
5bng_A4e-16275333159Homeobox protein Meis2
5bng_B4e-16275333159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.247841e-104callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG159200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792968.11e-162BEL1-like homeodomain protein 11
TrEMBLA0A3L6TG691e-164A0A3L6TG69_PANMI; BEL1-like homeodomain protein 11
STRINGPavir.Ia00979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.17e-37BEL1-like homeodomain 11