PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG157100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 305aa MW: 32747.2 Da PI: 4.5403 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 7.8e-17 | 212 | 248 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ Pavir.9NG157100.2.p 212 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 248 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.2E-8 | 71 | 106 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.319 | 71 | 106 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.2E-11 | 74 | 105 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.917 | 140 | 182 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.7E-15 | 140 | 180 | IPR010402 | CCT domain |
SMART | SM00401 | 8.0E-11 | 206 | 259 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-11 | 210 | 256 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.9E-14 | 211 | 250 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.83E-15 | 211 | 262 | No hit | No description |
Pfam | PF00320 | 2.1E-14 | 212 | 248 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 212 | 239 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MPDADVDVEM RAAAAAGASA APGDDDGEDG TGEDEEDGEE VDDEDEDEDE EERTAPAPAE 60 EPPAPAPVSA LPGNPNQLTL LFQGEVYVFE SVTPDKVESV LSLLGRGELP ADYAGKVVPS 120 QNENKGYDDI LRRTDIPAKR VASLLRFHEK RKERNFDKKI RYAVRKEVAL RMQRRKGQFA 180 GRASLEGESP APGCDPGSQS SGLDFVSRES KCQNCGTSEK MTPAMRRGPA GPRTLCNACG 240 LMWANKGTLR SCPKAKVESP VVGIGQVGND NKALVTPKND NTSVSASNGE ACSREERQRR 300 RDSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.27312 | 0.0 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG157100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793442.1 | 1e-153 | GATA transcription factor 18-like isoform X1 | ||||
Swissprot | Q10F25 | 1e-126 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | A0A3L6TRR5 | 1e-154 | A0A3L6TRR5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J38243.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-63 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG157100.2.p |
Publications ? help Back to Top | |||
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