PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG157100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 309aa    MW: 32794.2 Da    PI: 4.477
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG157100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.9e-17212248135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Pavir.9NG157100.1.p 212 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 248
                          **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.2E-871106IPR010399Tify domain
PROSITE profilePS5132014.31971106IPR010399Tify domain
PfamPF062003.3E-1174105IPR010399Tify domain
PROSITE profilePS5101712.917140182IPR010402CCT domain
PfamPF062033.7E-15140180IPR010402CCT domain
SMARTSM004018.0E-11206259IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-11210256No hitNo description
Gene3DG3DSA:3.30.50.107.0E-14211250IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.05E-15211262No hitNo description
PfamPF003202.1E-14212248IPR000679Zinc finger, GATA-type
PROSITE patternPS003440212239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MPDADVDVEM RAAAAAGASA APGDDDGEDG TGEDEEDGEE VDDEDEDEDE EERTAPAPAE  60
EPPAPAPVSA LPGNPNQLTL LFQGEVYVFE SVTPDKVESV LSLLGRGELP ADYAGKVVPS  120
QNENKGYDDI LRRTDIPAKR VASLLRFHEK RKERNFDKKI RYAVRKEVAL RMQRRKGQFA  180
GRASLEGESP APGCDPGSQS SGLDFVSRES KCQNCGTSEK MTPAMRRGPA GPRTLCNACG  240
LMWANKGTLR SCPKAKVESP VVGIGQVGND NKALVTPKND NTSVSASNGE ATVAAERSAK  300
GAVTVYNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.273120.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG157100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793442.11e-155GATA transcription factor 18-like isoform X1
SwissprotQ10F251e-127GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A3L6TRR51e-157A0A3L6TRR5_PANMI; Uncharacterized protein
STRINGPavir.J38243.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-63ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]