PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG153700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 1261aa    MW: 135317 Da    PI: 3.8773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG153700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.2e-1010441066527
                           --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                           +Crf++ +G C+yG++C+F+H++
  Pavir.9NG153700.2.p 1044 NCRFYMSNGSCSYGSSCHFNHPQ 1066
                           6********************97 PP
2zf-CCCH30.94.5e-1011021125427
                           ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                           + C +++r+GtCkyG +C+F+H++
  Pavir.9NG153700.2.p 1102 RKCTYYMRNGTCKYGKKCCFNHPE 1125
                           67********************96 PP
3zf-CCCH23.88e-0812281253126
                           --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                           +++++C+++++ G+Ck+  +CkF+H+
  Pavir.9NG153700.2.p 1228 PGEPECSHYMKHGYCKFQKSCKFHHP 1253
                           5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-410391066IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.60110391067IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-510431066IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-810441066IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-510451065IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.69510981126IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-510981125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-611011126IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-711021125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-511041125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3112271255IPR000571Zinc finger, CCCH-type
SMARTSM003560.003712271254IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-512291253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1261 aa     Download sequence    Send to blast
MAGAEDEDEF KDALAAADSP PSSPSPTSKP KPAAAAGGGG GGGLGRRLLS SIPIPASLSA  60
AIGRFSCPKP PASNVGLGLL LHGGLATPAD GYGNPASDAA PAISSPHLPP LASLQRQHGE  120
DQAAGLGAGL GEEGLGLVPA EEQGRPTAED REQEDVAVGG CSANGNDFPL RGQEEEGEQC  180
QCDELGVTAD GCMVQDQEVV VEQEGPREDC AAVVEDQSNI TAVEQCASDE TRAVKCDNAV  240
EVNEQVTDQE GAVSILDAVE DGVALGSQEE EDVAVAEQGE DVISVQDHLE VVEQCTGYQL  300
RTTTGDNAGQ DQDLLDQEEA TECHTALGAV EQCTNDGSKV VKAVNIVEEE RAVEQEGALG  360
ILDAAKDLSV LDAAKDLGVL DAAKDGAPVE SQEEDVVVKE QNEDVIFVQD QHKVVEQCTG  420
DLLRTATDDN AAQDQDVMEK EGATEDYTAV EAVEQCTNDG LKAVKDGNIV EEKEKAVEQE  480
VAVGVLDAAK DCSTVESQAE EDVVVAEQSE DSISVQNEHK VVEQCTGDQL KATADDNATQ  540
DQGVLEQEGA TECYTTLEAV EECANDETRA AKDGNVVEEK ERLVKQEGDV SVLNAAEDDI  600
IVEPHEGVVA AEQCEGDISV QDQHKVVEQC TSGLLRTTMD DSGAEGQEVV EQEGIIVDRD  660
AAADDIAVED KEKEIKQSAC DESRTTNDEN VTEANKKMVD QEDVIDKHGV ITDVSVVELS  720
EENSIVVVEQ GGDGISLPDE GNVVEQYTSD QLRATMDDNA AENKEIGEQE GAIVERVVTT  780
DGISVVDQEK EVEQSADAES TATKDEDGVE DNEDVVVAEQ GGVEISVGDV GNVVEQCTSD  840
QLRATMEDNA VECQEVVEQE GAIFERGATT VEDQEKEVEQ SAGNELRVTK DENTVEDAIG  900
KQGATKDGSG VESQEEDVVL GEQGGDDISV RDEGNVVEQC TSDLQRTTTD DNAAEDPEMV  960
EQGGVVSVLG AAKVDIAVES REDIVVAEQV EDGVSVQDQD KVVEQCTSDQ PRTSTDDFAA  1020
EDHEASRENI GFSTRYPQRS GKLNCRFYMS NGSCSYGSSC HFNHPQLKAK LEVSNFPSEQ  1080
RNREVEFLEL NRVGLPIREG ARKCTYYMRN GTCKYGKKCC FNHPEQVLDV QPHMPTGWDD  1140
TNLQSSPHSK KSAEYTTIND ISSGSEILPP NILRMLLPPQ NEPPCTEEKE MKVQKEAICD  1200
GTDYEHDFVM KSENVLQQQE KTIYPERPGE PECSHYMKHG YCKFQKSCKF HHPTYRLSRT  1260
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79730.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG153700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793429.10.0uncharacterized protein LOC112874363 isoform X1
TrEMBLA0A2S3IJ820.0A0A2S3IJ82_9POAL; Uncharacterized protein
STRINGPavir.Ia00947.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.16e-29C3H family protein