PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG153700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 1525aa    MW: 165451 Da    PI: 4.0763
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG153700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.9e-1010441066527
                           --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                           +Crf++ +G C+yG++C+F+H++
  Pavir.9NG153700.1.p 1044 NCRFYMSNGSCSYGSSCHFNHPQ 1066
                           6********************97 PP
2zf-CCCH30.65.6e-1011021125427
                           ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                           + C +++r+GtCkyG +C+F+H++
  Pavir.9NG153700.1.p 1102 RKCTYYMRNGTCKYGKKCCFNHPE 1125
                           67********************96 PP
3zf-CCCH21.73.5e-0712291254227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                            +++C+f +++G Ck+ + C++ H++
  Pavir.9NG153700.1.p 1229 ERPECPFLQKFGNCKFASACQYYHPK 1254
                           689*********************96 PP
4zf-CCCH391.3e-1213011326227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                           + ++C+f+++tG Ck+G+ CkF+H++
  Pavir.9NG153700.1.p 1301 GKPECPFYMKTGSCKFGADCKFHHPM 1326
                           789*********************95 PP
5zf-CCCH21.54.1e-0713931419127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                           ++++ Cr+++++G Ck+ + C F+H++
  Pavir.9NG153700.1.p 1393 PGEPDCRYYMQFGKCKFQSACIFNHPK 1419
                           5789*********************96 PP
6zf-CCCH352.4e-1114291452427
                           ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                           ++C+f+++tGtC++G+ C F+H++
  Pavir.9NG153700.1.p 1429 AECPFYMKTGTCQFGSACEFSHPK 1452
                           68********************96 PP
7zf-CCCH23.59.9e-0814921517126
                           --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                           +++++C+++++ G+Ck+  +CkF+H+
  Pavir.9NG153700.1.p 1492 PGEPECSHYMKHGYCKFQKSCKFHHP 1517
                           5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.60110391067IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-410391066IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-510431066IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-810441066IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-510451065IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.69510981126IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-510981125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-611011126IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-711021125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-511041125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.28112271255IPR000571Zinc finger, CCCH-type
SMARTSM003560.1312281254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.01412991327IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-712991326IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-1013011326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-513031327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-513051325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.85413921420IPR000571Zinc finger, CCCH-type
SMARTSM003560.004713921419IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-413941419IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-614251452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.51114251453IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-514271454IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-914291452IPR000571Zinc finger, CCCH-type
SMARTSM003560.003714911518IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3114911519IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-514931517IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1525 aa     Download sequence    Send to blast
MAGAEDEDEF KDALAAADSP PSSPSPTSKP KPAAAAGGGG GGGLGRRLLS SIPIPASLSA  60
AIGRFSCPKP PASNVGLGLL LHGGLATPAD GYGNPASDAA PAISSPHLPP LASLQRQHGE  120
DQAAGLGAGL GEEGLGLVPA EEQGRPTAED REQEDVAVGG CSANGNDFPL RGQEEEGEQC  180
QCDELGVTAD GCMVQDQEVV VEQEGPREDC AAVVEDQSNI TAVEQCASDE TRAVKCDNAV  240
EVNEQVTDQE GAVSILDAVE DGVALGSQEE EDVAVAEQGE DVISVQDHLE VVEQCTGYQL  300
RTTTGDNAGQ DQDLLDQEEA TECHTALGAV EQCTNDGSKV VKAVNIVEEE RAVEQEGALG  360
ILDAAKDLSV LDAAKDLGVL DAAKDGAPVE SQEEDVVVKE QNEDVIFVQD QHKVVEQCTG  420
DLLRTATDDN AAQDQDVMEK EGATEDYTAV EAVEQCTNDG LKAVKDGNIV EEKEKAVEQE  480
VAVGVLDAAK DCSTVESQAE EDVVVAEQSE DSISVQNEHK VVEQCTGDQL KATADDNATQ  540
DQGVLEQEGA TECYTTLEAV EECANDETRA AKDGNVVEEK ERLVKQEGDV SVLNAAEDDI  600
IVEPHEGVVA AEQCEGDISV QDQHKVVEQC TSGLLRTTMD DSGAEGQEVV EQEGIIVDRD  660
AAADDIAVED KEKEIKQSAC DESRTTNDEN VTEANKKMVD QEDVIDKHGV ITDVSVVELS  720
EENSIVVVEQ GGDGISLPDE GNVVEQYTSD QLRATMDDNA AENKEIGEQE GAIVERVVTT  780
DGISVVDQEK EVEQSADAES TATKDEDGVE DNEDVVVAEQ GGVEISVGDV GNVVEQCTSD  840
QLRATMEDNA VECQEVVEQE GAIFERGATT VEDQEKEVEQ SAGNELRVTK DENTVEDAIG  900
KQGATKDGSG VESQEEDVVL GEQGGDDISV RDEGNVVEQC TSDLQRTTTD DNAAEDPEMV  960
EQGGVVSVLG AAKVDIAVES REDIVVAEQV EDGVSVQDQD KVVEQCTSDQ PRTSTDDFAA  1020
EDHEASRENI GFSTRYPQRS GKLNCRFYMS NGSCSYGSSC HFNHPQLKAK LEVSNFPSEQ  1080
RNREVEFLEL NRVGLPIREG ARKCTYYMRN GTCKYGKKCC FNHPEQVLDV QPHMPTGWDD  1140
TNLQSSPHSK KSAEYTTIND ISSGSEILPP NILRMLLPPQ NEPPCTEEKE MKVQKDPDWP  1200
SASDDSDGCC SADSSDGPLC KQEHMDYPER PECPFLQKFG NCKFASACQY YHPKDKFPSK  1260
YHLKDKFQRR FYPKDNFQSR YRSKRDPPLA EELKVYPDRP GKPECPFYMK TGSCKFGADC  1320
KFHHPMDLTP SMQCPGSPKR LVAANQHHPA ARIPSIQGPA SPERSVAANE HHQSARITLQ  1380
DHMYQQQKCP ERPGEPDCRY YMQFGKCKFQ SACIFNHPKD RLSTGWHPAE CPFYMKTGTC  1440
QFGSACEFSH PKDQCSSTGE AICDGTDYEH DFVMKSENVL QQQEKTIYPE RPGEPECSHY  1500
MKHGYCKFQK SCKFHHPTYR LSRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79730.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG153700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793429.10.0uncharacterized protein LOC112874363 isoform X1
TrEMBLA0A2S3IJ820.0A0A2S3IJ82_9POAL; Uncharacterized protein
STRINGPavir.Ia00947.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.25e-33zinc finger nuclease 3