PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG142700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 372aa    MW: 39775.5 Da    PI: 8.2725
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG142700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP163.78.9e-511132711136
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                          +a++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k+ai+e++ +  +++sec e++sss s + + ++ 
  Pavir.9NG142700.1.p 113 PAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMTD--DASSECvEDGSSSLSIDGKPNPa 200
                          589**************************************************************..66666999999999999555557 PP

                  TCP  89 .......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                                 k +k+a+ +k+++ks +++  ++ke+rakar+rarert+ek+r+++++
  Pavir.9NG142700.1.p 201 elglgagdqqpkgngrsegkkpaKPRKAATAPKPPRKSGNAHPVPDKETRAKARERARERTKEKHRMRWVK 271
                          777778888888889999999966666666999999****9***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-45115267IPR005333Transcription factor, TCP
PROSITE profilePS5136935.255116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.593247264IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MFPFCDSSSP MDLPLYQQLQ LSPPSPKPDQ SSSFFYYPCS PPFAAAADAS FHLSYQLGSA  60
AAAAATPPQA VIDSPELPLQ PPLMEQAPAP ATEQDAACAD AQGAGISLDR ASPAARKDRH  120
SKICTAGGMR DRRMRLSLDV ARKFFALQDM LGFDKASKTV QWLLNTSKAA IQEIMTDDAS  180
SECVEDGSSS LSIDGKPNPA ELGLGAGDQQ PKGNGRSEGK KPAKPRKAAT APKPPRKSGN  240
AHPVPDKETR AKARERARER TKEKHRMRWV KLASAIDVEA AAASVARDRP SSMSSNLNHH  300
SSSNMARAAA ELEERCSSTL NLNNGGRMQE ITGASDVIVA FGNGGYGAGN YYCQEQWDLG  360
GVVFQQNSRF Y*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in axillary inflorescence primordia, immature internodes below these primordia, and immature husk surrounding these primordia. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:9087405}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG142700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432600.0AC243260.1 Panicum virgatum clone PV_ABa103-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796975.10.0transcription factor TEOSINTE BRANCHED 1-like
SwissprotQ93WI20.0TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A3L6TGV00.0A0A3L6TGV0_PANMI; Transcription factor TEOSINTE BRANCHED 1-like
STRINGPavir.Ia00838.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-24TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]