PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG140700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 366aa MW: 38962.3 Da PI: 6.6055

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG140700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	86.4	3.7e-27	79	173	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ +++ ql+eK+rrLK+K++ +++++ g +p+ ++hd+++f+l Pavir.9NG140700.1.p 79 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRAQLSEKLRRLKNKYRSVSARVAGGLDPARLAPHDRDVFHL 167 79*****************.556878888******************************************************* PP DUF573 92 skkiWg 97 ++++W+ Pavir.9NG140700.1.p 168 CSRLWD 173 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.1E-25	80	173	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MASGQQTLPV PAPVPPNPNP TAPADPTPPA GARKLPIKRR SPRPSSSPPS SSSPASSDPL 60 HAPAPAGGAG SDQQQPPFKF QRIWSESDEL RFLQGLLGCG AQGLVFPRDL NVFYDRFSES 120 MPQPYTRAQL SEKLRRLKNK YRSVSARVAG GLDPARLAPH DRDVFHLCSR LWDPANAATS 180 PFASSAGASG NKRRRSNPRG TQLLPPDASG DSNSHDYNGI GSSAPGLFPD VSNGEDVFYL 240 EQESGHLGDH EGATLDSKFG VIVQEQPEAV AALPNGNNGI GNEIGDHKVV VPCSNEHRMA 300 NAVLDVFEEC LREAKASGII NGGNVGGGAE ESELAKRWRA QRMDELDVLN WRLRLLVEDA 360 AAAGH*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MASGQQTLPV PAPVPPNPNP TAPADPTPPA GARKLPIKRR SPRPSSSPPS SSSPASSDPL  60
HAPAPAGGAG SDQQQPPFKF QRIWSESDEL RFLQGLLGCG AQGLVFPRDL NVFYDRFSES  120
MPQPYTRAQL SEKLRRLKNK YRSVSARVAG GLDPARLAPH DRDVFHLCSR LWDPANAATS  180
PFASSAGASG NKRRRSNPRG TQLLPPDASG DSNSHDYNGI GSSAPGLFPD VSNGEDVFYL  240
EQESGHLGDH EGATLDSKFG VIVQEQPEAV AALPNGNNGI GNEIGDHKVV VPCSNEHRMA  300
NAVLDVFEEC LREAKASGII NGGNVGGGAE ESELAKRWRA QRMDELDVLN WRLRLLVEDA  360
AAAGH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.19647	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG140700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967779	0.0	EU967779.1 Zea mays clone 306034 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791535.1	0.0	probable transcription factor At4g00390
TrEMBL	A0A3L6TGC6	0.0	A0A3L6TGC6_PANMI; Uncharacterized protein
STRING	Pavir.Ib04304.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8695	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.1	3e-12	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pavir.9NG140700.1.p