PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG134200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 404aa    MW: 44117.7 Da    PI: 7.2986
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG134200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-071760339
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                         +r C+ + + +++++C  ++ +lC+ C  + H+        H+v
  Pavir.9NG134200.1.p 17 ARSCDGCMRRRARWHCPADDAYLCQACDASVHSAnplarrhHRV 60
                         678*****************************668888886655 PP
2CCT67.24.4e-23326369144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Pavir.9NG134200.1.p 326 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 369
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-71562IPR000315B-box-type zinc finger
PROSITE profilePS501199.7691562IPR000315B-box-type zinc finger
PfamPF006431.9E-51759IPR000315B-box-type zinc finger
CDDcd000211.40E-101862No hitNo description
PfamPF062039.0E-18326368IPR010402CCT domain
PROSITE profilePS5101715.993326368IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTSAGSAAGA ALGARTARSC DGCMRRRARW HCPADDAYLC QACDASVHSA NPLARRHHRV  60
RLPSASCSSP PRDPDAPAWL HGLKRRPRTA RSKPGGSGKH EATPASIAAA VSAAVPDLEA  120
EESGAGIVGD DDDFHGVEDE YEDLLYRVPV FDPMLAELYN PVTDEGEQKP ACLISSLAET  180
SPEFASGSAE ADGLSGFDVP DMELASFAAD MESLFMGVED GFDDLGFLDE EKPQVNVDLG  240
RMNLEATATP APPPELDEKK RKRPEMILKL NYEGVIASWV RDGGSPWFHG ERRPHLDPYD  300
ESWSGFPAGC RGILGGAVTA VTGGEREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR  360
MKGRFVKRSS LPSLPRPPPP PQQQKQPPRA MMPHVGAHGR FRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288LKRRPRT
2336352RRTRLFAKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.39780.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG134200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278430.0KJ727843.1 Zea mays clone pUT5887 C2C2-CO-like transcription factor (COL8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797667.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2S3IIU80.0A0A2S3IIU8_9POAL; Uncharacterized protein
STRINGPavir.Ia00854.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-58B-box type zinc finger protein with CCT domain