PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG124900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 347aa    MW: 37623.7 Da    PI: 6.4076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG124900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12167214355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Pavir.9NG124900.2.p 167 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 214
                          67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.809164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-17167232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17168225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.63E-14169218No hitNo description
SMARTSM003536.1E-15170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MATQWFSNMV IDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ GEVDQALAAA LMPLQQPAAA  60
AEHRPRKAAK VNTSWDSCIT EQGSPADSSS PTILSFGGHA FAKAETHQLP SAPYCGAPAK  120
APKQEVVDAG ATAFHQERPA KRSYDAMVAE VAKVPAPATT RPASQNQDHI LAERKRREKL  180
SQRFIALSKI VPGLKKMDKA SVLGDAIKYV KQLQDQVKGL EDEARRRPVE AAVLVKKSQL  240
SADDDDGSSC DENFVGTEAA GTLPEIEARV SDRTVLIRIH CENRKGALIS ALSEVERLGL  300
TIMNTNVLPF TTSTLDITVM AMAGDDFCLS VKDIVKKLNQ AFKSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13168223863Transcription factor MYC2
5gnj_B6e-13168223863Transcription factor MYC2
5gnj_E6e-13168223863Transcription factor MYC2
5gnj_F6e-13168223863Transcription factor MYC2
5gnj_G6e-13168223863Transcription factor MYC2
5gnj_I6e-13168223863Transcription factor MYC2
5gnj_M6e-13168223863Transcription factor MYC2
5gnj_N6e-13168223863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
2173178RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.105950.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG124900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365520.0BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795190.10.0transcription factor bHLH18-like
TrEMBLA0A2S3III00.0A0A2S3III0_9POAL; Uncharacterized protein
STRINGSi036393m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-57bHLH family protein