PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG122800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 151aa MW: 16326.7 Da PI: 4.5788 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00064 | 2 | 18 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka++L A++Y+k+Lq Pavir.9NG122800.2.p 2 DKASVLGDAIKYVKQLQ 18 8***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-5 | 1 | 29 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-5 | 1 | 36 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDKASVLGDA IKYVKQLQDQ VKGLEDEARR RPVEAAVLVK KSQLSADDDD GSSCDENFVG 60 TEAAGTLPEI EARVSDRTVL IRIHCENRKG VLIAALSEVE CLGLTIMNTN VLPFTTSTLD 120 ITVMAMAGDD FCMSVKDIVK KLNQAFKSSF * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10595 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG122800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956596 | 1e-179 | EU956596.1 Zea mays clone 1567551 symbiotic ammonium transporter mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795190.1 | 1e-103 | transcription factor bHLH18-like | ||||
TrEMBL | A0A2S3III0 | 1e-102 | A0A2S3III0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7C1M3 | 1e-102 | A0A2T7C1M3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J27306.1.p | 1e-105 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG122800.2.p |