PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG122800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 20963.2 Da PI: 7.8504 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.2e-13 | 12 | 58 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq Pavir.9NG122800.1.p 12 DHILAERKRRENLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 58 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 8 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-17 | 12 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 13 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-18 | 13 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.18E-13 | 13 | 62 | No hit | No description |
SMART | SM00353 | 8.4E-15 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MTNSMCRGIS RDHILAERKR RENLSQRFIA LSKIVPGLKK MDKASVLGDA IKYVKQLQDQ 60 VKGLEDEARR RPVEAAVLVK KSQLSADDDD GSSCDENFVG TEAAGTLPEI EARVSDRTVL 120 IRIHCENRKG VLIAALSEVE CLGLTIMNTN VLPFTTSTLD ITVMAMAGDD FCMSVKDIVK 180 KLNQAFKSSF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 5 | 67 | 1 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 5 | 67 | 1 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 5 | 67 | 1 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 5 | 67 | 1 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 5 | 67 | 1 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 5 | 67 | 1 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 5 | 67 | 1 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 5 | 67 | 1 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 21 | ERKRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10595 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG122800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036552 | 0.0 | BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds. | |||
GenBank | EU956596 | 0.0 | EU956596.1 Zea mays clone 1567551 symbiotic ammonium transporter mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795190.1 | 1e-124 | transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 6e-53 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2S3III0 | 1e-123 | A0A2S3III0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J27306.1.p | 1e-128 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG122800.1.p |