PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG121500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 317aa    MW: 34823 Da    PI: 6.1678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG121500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10147195355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pavir.9NG121500.1.p 147 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 195
                          58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16143211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16147211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-8147195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-11148199No hitNo description
SMARTSM003534.6E-10150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYSGQQSDQC PSANSGREFS EANRNTVTMH QKMGYNSGPY GFGPYNMGLE ERPGLYQSSS  60
GTFSQNIQMS DEHSGGVKKR KGMDDCVAML QNAGDQQTEG SSQPERISLE GNRKISPKMQ  120
SKEDSSDGDG TKEDYVHVRA KQGQATNSHS LAERLRRKKI SERMKLLQDL VPGCSKITGK  180
AVMLDEIINY VQSLQRQVEF LSMKLATVNP ELGFDIEQIL SKQMMLSQDR HFAFYGVDPG  240
SSSLASQFSQ GIMQPPMMCN ISNPADVLQG TIHDVSTMNQ IPAMWEGLQN LPHMNFNPGV  300
AADSSANNSG SMKIEQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG121500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353480.0BT035348.1 Zea mays full-length cDNA clone ZM_BFb0057A01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796141.10.0transcription factor bHLH74-like
SwissprotQ6NKN91e-51BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A2S3IIE70.0A0A2S3IIE7_9POAL; Uncharacterized protein
TrEMBLA0A2T7C1I40.0A0A2T7C1I4_9POAL; Uncharacterized protein
TrEMBLA0A3L6S4S40.0A0A3L6S4S4_PANMI; Transcription factor bHLH49-like
STRINGPavir.Ia00718.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.16e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]