PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG114400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 230aa MW: 24684 Da PI: 9.8256 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.1 | 1.6e-15 | 171 | 207 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Pavir.9NG114400.3.p 171 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 207 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.4E-8 | 38 | 73 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.596 | 38 | 73 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.9E-11 | 40 | 72 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.6E-14 | 100 | 140 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.898 | 100 | 142 | IPR010402 | CCT domain |
SMART | SM00401 | 1.2E-10 | 165 | 219 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.81E-10 | 168 | 218 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.7E-14 | 169 | 209 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.32E-13 | 171 | 217 | No hit | No description |
Pfam | PF00320 | 3.0E-13 | 171 | 207 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 171 | 198 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAAEPAADDH DPRPPPADGP AAAGGGDASA SAAAEALMSA ASEQLTMVYQ GDVYVFDPVS 60 PQKVQAVLLV LGGYEVPPDL LNRAVPTAND EKSTTVAARR FASLMRFREK RKERCYGKRI 120 RYNVRKEVAQ KMKRRKGQFA GRSDFGDGAC SSVACGSPAN GEDDHFKETH CQNCGISSRL 180 TPAMRRGPAG PRSLCNACGL MWANKGTLRS PLHAPKMTLQ HPANPRRYK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.42447 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG114400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958286 | 0.0 | EU958286.1 Zea mays clone 1683206 GATA transcription factor 25 mRNA, complete cds. | |||
GenBank | KJ727983 | 0.0 | KJ727983.1 Zea mays clone pUT6099 ZIM transcription factor (ZIM2) mRNA, partial cds. | |||
GenBank | KU512869 | 0.0 | KU512869.1 Zea mays TIFY18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793125.1 | 1e-138 | GATA transcription factor 19-like | ||||
Swissprot | B8AR30 | 1e-115 | GAT19_ORYSI; GATA transcription factor 19 | ||||
TrEMBL | A0A3L6TR35 | 1e-137 | A0A3L6TR35_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia00665.1.p | 1e-166 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-53 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG114400.3.p |