PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG084300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 1183aa MW: 132909 Da PI: 6.2268

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG084300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.8	1.5e-07	127	183	1	57
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtrae 57 +fY +Y+++vGF+ r ++++s +ge ++++f+C + +++++ k +++ + ++ae Pavir.9NG084300.1.p 127 EFYYRYGERVGFKARPGSNRRSVGDGEKIMQRFQCWRGNYSSRRGKGKDSDEGKEAE 183 6***********************************999999888873333333332 PP
2	FAR1	76.6	4.9e-24	411	495	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YA+ GFsvrk k+ +n +++r +vCskeg+r +++++ +++++r+etrtgC+a++++k + +gk++vt+++++HnH+ Pavir.9NG084300.1.p 411 EFYVNYAEAEGFSVRKGFLDKTAKNV-TKSRAYVCSKEGFRPKNSSA--ESKKPRPETRTGCQAHMTIKITASGKYVVTEFVSDHNHD 495 6******************95555.99**********9988..99**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-4	127	183	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.5E-21	411	495	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-23	597	688	IPR018289	MULE transposase domain
Pfam	PF04434	1.2E-6	864	908	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.534	864	911	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-7	886	913	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1183 aa Download sequence Send to blast
MVGRAAATAE AASCDPPPEP DAPSLQVGAA DEQDDAQAGA AAGPPPPPQQ AGDADEGEDV 60 SGSPAAPLGG RCGAMMEVVG KDGGGGKWKV SKLVVEHNHE LQVAPSEVAA TVPALGMEFD 120 SVDAAKEFYY RYGERVGFKA RPGSNRRSVG DGEKIMQRFQ CWRGNYSSRR GKGKDSDEGK 180 EAEEMVEAAA RKRKREPYKT RSRNAGKKDA EVVEVKGVGV GGPGNGLEVQ NGRGSSSRRG 240 RSKKGMVEQD GKSVAGLEVE NDRVHDKEEL EDEGKDQEGV EEEVQVEVKR GRGRPRKAVT 300 EDDALQAHVL RELGVRASQY NHEERKKILS KYLSKRQSRP ASSRPTKPSQ QPSERRSKRL 360 EKQNLKLEEK AEGKEDDIIE AEPDPEDEVV AGPGGEPKIG MVFLNEDKAY EFYVNYAEAE 420 GFSVRKGFLD KTAKNVTKSR AYVCSKEGFR PKNSSAESKK PRPETRTGCQ AHMTIKITAS 480 GKYVVTEFVS DHNHDREAPL VDIQILKSHK LLAKVQQPPD PPKVVLIPIE YKNYTRTKRI 540 KDMQLGDAQA ISEYLRRMKG ENPSFFYAIQ VDEDDQFTNV FWADIKSIMD YNYFGDVVCI 600 DTRYCTNDYG RPLLLFIGVN HHRQPIIFGT ALIYDDSVQS FRWLLETFKS AMSGKQPKTV 660 LTDQSTSLID AISSVWPGTT HRFSLLHLFL TASNALRDNF QDSETFALDF SRWLYDYEEE 720 DFISSWEILS EKYNLKDSEW LSKLYDDRER WALPYGRDTF CADIAATLRS DNTDTILKDL 780 LKSEVDLRTF FNSYDKFLEE KRLAEQQADY LGAQMTQRVV PLRLLWQAAN SYTPSLFEMF 840 RTEFEQISDC IVYSCGELGP ISEYQVTVKD RPRSQFVRFD STECMAVCSC KKFEFTGLPC 900 CHVLKILELR NVKELPPHYI LKRWRKDAQS EAPGESYGYA AIDEDPRFSS SRRYNTLCRT 960 LYKIAAKASE SIEAYAFLEN QYEQLVEQVE VLLQAKLHDK SSLSAILKGH QPHLLQSEVS 1020 NSEPRRVTAK KNKNIEPRRQ QQSPLDSNKK KARQGLMEPE EIDVPLRVVP PTVSNDIPNH 1080 LRTPTSQFLA PSHIMQAPYV AQQFGLGSLQ GFPGMSPFGQ LQEPTSLQQA SHLQPPPFHN 1140 GPQIPQAPPP DIQSLQFISS NPQLGHQTTD QGQYTIPVWD FL*

Sequence ? help Back to Top

Protein Sequence Length: 1183 aa Download sequence Send to blast

MVGRAAATAE AASCDPPPEP DAPSLQVGAA DEQDDAQAGA AAGPPPPPQQ AGDADEGEDV  60
SGSPAAPLGG RCGAMMEVVG KDGGGGKWKV SKLVVEHNHE LQVAPSEVAA TVPALGMEFD  120
SVDAAKEFYY RYGERVGFKA RPGSNRRSVG DGEKIMQRFQ CWRGNYSSRR GKGKDSDEGK  180
EAEEMVEAAA RKRKREPYKT RSRNAGKKDA EVVEVKGVGV GGPGNGLEVQ NGRGSSSRRG  240
RSKKGMVEQD GKSVAGLEVE NDRVHDKEEL EDEGKDQEGV EEEVQVEVKR GRGRPRKAVT  300
EDDALQAHVL RELGVRASQY NHEERKKILS KYLSKRQSRP ASSRPTKPSQ QPSERRSKRL  360
EKQNLKLEEK AEGKEDDIIE AEPDPEDEVV AGPGGEPKIG MVFLNEDKAY EFYVNYAEAE  420
GFSVRKGFLD KTAKNVTKSR AYVCSKEGFR PKNSSAESKK PRPETRTGCQ AHMTIKITAS  480
GKYVVTEFVS DHNHDREAPL VDIQILKSHK LLAKVQQPPD PPKVVLIPIE YKNYTRTKRI  540
KDMQLGDAQA ISEYLRRMKG ENPSFFYAIQ VDEDDQFTNV FWADIKSIMD YNYFGDVVCI  600
DTRYCTNDYG RPLLLFIGVN HHRQPIIFGT ALIYDDSVQS FRWLLETFKS AMSGKQPKTV  660
LTDQSTSLID AISSVWPGTT HRFSLLHLFL TASNALRDNF QDSETFALDF SRWLYDYEEE  720
DFISSWEILS EKYNLKDSEW LSKLYDDRER WALPYGRDTF CADIAATLRS DNTDTILKDL  780
LKSEVDLRTF FNSYDKFLEE KRLAEQQADY LGAQMTQRVV PLRLLWQAAN SYTPSLFEMF  840
RTEFEQISDC IVYSCGELGP ISEYQVTVKD RPRSQFVRFD STECMAVCSC KKFEFTGLPC  900
CHVLKILELR NVKELPPHYI LKRWRKDAQS EAPGESYGYA AIDEDPRFSS SRRYNTLCRT  960
LYKIAAKASE SIEAYAFLEN QYEQLVEQVE VLLQAKLHDK SSLSAILKGH QPHLLQSEVS  1020
NSEPRRVTAK KNKNIEPRRQ QQSPLDSNKK KARQGLMEPE EIDVPLRVVP PTVSNDIPNH  1080
LRTPTSQFLA PSHIMQAPYV AQQFGLGSLQ GFPGMSPFGQ LQEPTSLQQA SHLQPPPFHN  1140
GPQIPQAPPP DIQSLQFISS NPQLGHQTTD QGQYTIPVWD FL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	296	KRGRGRPRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9356	0.0	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG084300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795877.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A3L6TUH1	0.0	A0A3L6TUH1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRING	Pavir.J22861.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9NG084300.1.p