PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG081800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 43989.9 Da PI: 6.2594 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.9 | 3.3e-17 | 228 | 274 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +++eY+ksLq Pavir.9NG081800.3.p 228 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 274 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.88E-18 | 220 | 278 | No hit | No description |
SuperFamily | SSF47459 | 6.41E-21 | 222 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.482 | 224 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-14 | 228 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-21 | 228 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-17 | 230 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MDGNARPAAN QKKPIVTDDD LVELLWHNGS VVAQPQAHQR PAPSDRPGSS GLTGEETAAW 60 FPDTLDDALE KDLYTQLWYS SIIDAAPHHG DTLPGPSSPP PPPELAHPVT PPVGSSGVES 120 SWAGDICSTF YGSNQVPGMP AGVNRGKDAS FQSEVPHGAG AGTSSSGGSG SNYGGSGLPS 180 DSGHVQKGKG ICRDDSDSRS EDAECEATEE AKSSRRCGTK RRTRAAEVHN LSERRRRDRI 240 NEKMRALQEL IPHCNKTDKA SILDETIEYL KSLQMQVQIM WMTSGMAPMM FPGAHQFMSP 300 MALGMNSACV TQMSYMNLPL PNHIPLNSSP TMNPINSPSI ANQMQNVHLR EASNHFLHQG 360 GGQISVPQVP GTHVYGPEIP QAEQHNRILE VPASTVAATS RAGQLHTYGG A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 236 | KRRTRAAEVHNLSERRRR |
2 | 232 | 237 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15027 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG081800.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793215.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like | ||||
Refseq | XP_025793216.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like | ||||
Refseq | XP_025793217.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like | ||||
Swissprot | Q10CH5 | 1e-142 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A3L6TIV1 | 0.0 | A0A3L6TIV1_PANMI; Transcription factor PIF4-like isoform X1 | ||||
STRING | Pavir.Ia00490.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.4 | 3e-36 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG081800.3.p |
Publications ? help Back to Top | |||
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