PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG079800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 386aa MW: 39424.6 Da PI: 9.868 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.1 | 3.9e-35 | 66 | 188 | 2 | 126 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsss 87 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a ai++l+ +++ + + e ++ +++ Pavir.9NG079800.1.p 66 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASDAIDKLPALDTAAFAALpgpaE---ADAAKVKQQL 152 689*************************************************************4444433343221...2222111122 PP TCP 88 gkaaksaakskksqksaasalnlak.esrakarararert 126 +s+ s++s++s+ s l+l++ +sr a ar+r+ Pavir.9NG079800.1.p 153 ---GSSSGGSSPSETSKGSELSLSRsDSR-GGAAAARDRE 188 ...22333445555555555777774444.3333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-34 | 67 | 195 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.77 | 68 | 126 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MEAVGDGAAA GAGDGAPPGR SQQGAKRGRG GGVRGGEAEA AWGLPPALPP PQGPGAGSRI 60 YRVRASGGKD RHSKVYTAKG IRDRRVRLSV PTAIQFYDLQ DRLGFDQPSK AIEWLINAAS 120 DAIDKLPALD TAAFAALPGP AEADAAKVKQ QLGSSSGGSS PSETSKGSEL SLSRSDSRGG 180 AAAARDREVT VASTSAQAAS FTELLTGVAS SGAISAAEHK QSWQQQQPSA SAAAAADCVG 240 IARPGKGAHG LSTHAFSGPI KFGNAPPFGM VPAQPFNFTS HVEMPHFSLG QDALVASSPP 300 AAGDYSLNFS MSSGFLGTNR GTLQSNSQSN FSGHHHQQLQ RLDGPFLFGH AAAAHPASEN 360 QLAASAALQL WDGFRHSGMK EKSKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-26 | 73 | 127 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-26 | 73 | 127 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17534 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG079800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956595 | 0.0 | EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466344.1 | 0.0 | transcription factor PCF6 | ||||
Swissprot | A2XMN1 | 1e-114 | PCF6_ORYSI; Transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-114 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A3L6TG38 | 0.0 | A0A3L6TG38_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia00505.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 2e-35 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG079800.1.p |