PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG076500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 197aa MW: 21566.7 Da PI: 9.2281 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 73.4 | 4.1e-23 | 104 | 195 | 272 | 363 |
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 e+kl+++s er+ vEr++lg+e+ +v+ ega+rrerh +l++W r+e aGF++vpls+ a q lr++++ g + e+ g+lvl+ Pavir.9NG076500.1.p 104 ESKLGSDSAERAEVERAVLGEEVWDVLLREGARRRERHDRLQQWAPRMEVAGFRSVPLSYVALRQGINTLRRCGMGGCESREHGGCLVLC 193 678999************************************************************************************ PP GRAS 362 Wk 363 W+ Pavir.9NG076500.1.p 194 WR 195 *7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.258 | 1 | 186 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-20 | 104 | 195 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MPNPSIRYPS DSGGSTTPSP SPPPSCAPLP LRRPLLRAPP QLTPPPSSPP LREAPPAPPP 60 AARPCHPIPC ALRPHSSPRW KPRAPDPTAP PEELHVEELG RRPESKLGSD SAERAEVERA 120 VLGEEVWDVL LREGARRRER HDRLQQWAPR MEVAGFRSVP LSYVALRQGI NTLRRCGMGG 180 CESREHGGCL VLCWRS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG076500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50420.1 | 9e-15 | scarecrow-like 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG076500.1.p |