PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG069200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 1222aa    MW: 137043 Da    PI: 6.4584
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG069200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.12.4e-07127186160
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60 
                          +fY  Y+++vGF+ ++ ++++s  nge ++++f+C +  +++++ k +++ + ++ae+ +
  Pavir.9NG069200.1.p 127 EFYYGYGERVGFKACTGSNRRSVGNGEKIMQRFQCWRGNYSSRRGKGKDSDEGKEAEEMV 186
                          6***********************************999998888874443333333333 PP
2FAR174.22.8e-23449533188
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          +fY +YA+  GFsvrk    k+ +n   ++r +vCskeg+r ++ ++  +++++r+etrtgC+a++++k + +gk++vt+++++HnH+
  Pavir.9NG069200.1.p 449 EFYVNYAEAEGFSVRKGFLDKTAKNV-KKSRAYVCSKEGFRPKNISA--ESKKPRPETRTGCQAHMTIKITASGKYVVTEFVSDHNHD 533
                          6********************96555.899*************9988..99************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-5127198IPR004330FAR1 DNA binding domain
PROSITE profilePS5115210.416321381IPR001289Nuclear transcription factor Y subunit A
PfamPF031017.7E-21449533IPR004330FAR1 DNA binding domain
PfamPF105513.1E-22635726IPR018289MULE transposase domain
PfamPF044342.0E-6902946IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.534902949IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-7924951IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1222 aa     Download sequence    Send to blast
MVDRAAAPAE TASCDPTPEP DAPPRQSGAA DEQEDAPAGA AAGPPPPPQQ AGDADEGEDV  60
SGSPAGPPAE RCGAMMEVVG KDGGGGKWKV SKLVVEHNHE LQVAPGEVAA TVPALGMEFD  120
SVDAAKEFYY GYGERVGFKA CTGSNRRSVG NGEKIMQRFQ CWRGNYSSRR GKGKDSDEGK  180
EAEEMVEAAA AAAAAARKRK REPYKTRSRN RNAGKKDAEV VEVKGVGVGG PENGLEVQNG  240
RGSRRGRSKK GMVEQDGKSV AGLEVEKDGV QDAAADSNDE ELEDDGKDQE GVEEDVQVEV  300
KRGRGRPRKA VTEDDALQAH VLRELGVRAS QYNHEERKKI ISKYLSKRQS RPASNRPTKI  360
ASRQALAERR KRGNGGRFLS SEAQLPSRQP SERRAKRLEK QNLKMEEKAE GKEDDIIEAE  420
PDPENEVVAG PGGELKIGMV FLNEDKAYEF YVNYAEAEGF SVRKGFLDKT AKNVKKSRAY  480
VCSKEGFRPK NISAESKKPR PETRTGCQAH MTIKITASGK YVVTEFVSDH NHDREAPLVD  540
IQILKSQKLL AKVQQPPDPP KVVLIPNEYK NYTRTKCIKD MQLGDAQAIS EYLRRMKGEN  600
PSFFYAIQVD EDDQFTNVFW ADIKSIMDYN YFGDVVCIDT RYCTIDYGRP LLLFIGVNHH  660
KQPIIFGTAL IYDDSVQSFR WLLETFKSAM SGKQPKTVLT DQSTSLIDAI STVWPGTTHR  720
FSLLHLFLTA SNVLRDNFQD SETFALDFSR WLYDYEEEDF ISSWEILSEK YNLKDSEWLS  780
KLYDDRERWA LPYGRDTFCA DIAATLRSDN TDTILKDLLK SEVDLRTFFN SYDKFLVEKR  840
LAEQQADYLG AQMTQRVAPL RLLWQVANSY TPSLFEMFRM EFEQISNCIV YSCGEIGPIS  900
EYQVTVKDRP RSQFVRFDLT ECMAVCSCKK FEFTGLPCCH VLKILELRNI KELPPHYILK  960
RWRKDAQSEA PGESYGYAAI DEDPRFSLSR RYNTLCRTLY KIAAKASESF EAYAFVENQY  1020
EQLVEQVEVL LQAKLHDKSS LSAILKGHQP HLLQSEVSNS EPRRVTAKKN KNVEPRRQQQ  1080
SPLDSNKKKK ARQGLLEPEE IDIPLRIVPP TVSNDIPNHL RTPTSQFLAP SHIMQAPYVA  1140
QQFGLGSLQG FPGMSPFGQL QEPAPLHQPS HLQPPPFHNG PQIPQAPPPD IQSLQFLSSN  1200
PQLGHQTTDQ GQYTIPVWDF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300308KRGRGRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93560.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG069200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795877.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A3L6TUH10.0A0A3L6TUH1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRINGPavir.J33757.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5