PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG065900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 812aa    MW: 93364.7 Da    PI: 8.5865
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG065900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.73.9e-1395190190
                 FAR1   1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          ++Yn Y+ e+GF +r  k++ s         + ++    ++f+Cs+         +   ++ ++++++t+Cka+l++++++d+ w+v + 
  Pavir.9NG065900.1.p  95 EYYNLYSWECGFGIRLGKKRWSekkrknnqpDGTRYQLGQEFYCSCRVIYVCGIPD---ANVKTSSSKTNCKAMLRLHRTQDDGWVVVEH 181
                          69*************98877665444333222222344578899998888887666...7788999************************ PP

                 FAR1  82 eleHnHela 90 
                           +eHnH+l+
  Pavir.9NG065900.1.p 182 ISEHNHPLS 190
                          *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1095190IPR004330FAR1 DNA binding domain
PfamPF105517.0E-28293386IPR018289MULE transposase domain
PfamPF044347.2E-7577611IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.324577613IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-5588615IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MAAAEVSLSV DGVEHYPDEG AISIGTSHRG IAEGKQGVVW RKRNTKSEGP NFRVPNTSKG  60
SALQRALLKF ADRTTDYIIN PYVGTEFDHC DEAYEYYNLY SWECGFGIRL GKKRWSEKKR  120
KNNQPDGTRY QLGQEFYCSC RVIYVCGIPD ANVKTSSSKT NCKAMLRLHR TQDDGWVVVE  180
HISEHNHPLS QTCGEKKQEN NIGITKLYSI LGDFFGCMQN VPATKRCLKT LCQKINREQA  240
EDDIKKTLNM ISELRRNDPG FMFSVDTDED GRIKTLMWTN SRSRMQYEHF GDVVSFDTTF  300
KTNLYDMPFG LFVGVNDHFQ TVLLGGVLMT DEKIESSKWV FREFASLMGG KEPSTILTDQ  360
CRAMEVAIAE EWRNTVHRWC KWHVLKRVKE CVGTKYTSIK EFRDKFHLML NEMLTPEEFE  420
GSWLTLLKEY GLENNAFLAQ IYETRKKWVK SYFKGVFCAR MTSTQRSESA NHMLKNILSP  480
ACTLHQFLKQ YMKMQYIWDE DENYEERRNK LNVKKVTTGG PLVVHAHNIY TLKVFGLFCQ  540
LKEESEFYQA SLCEDGINYE VEYYDLSRVQ RWCKGRYRVE VDELATKYTC ECGLFEHFGL  600
PCSHILRVLI YSGVRRIPGC MIMQRWTKQA RHLLPADLAQ YQKHNPALLA QTFRHSSLML  660
KALRFVEMGD SNVQSHSIAM KILDDGIECL AEVSKVKDGL GLSHNNLESS DPVPGCGLVD  720
EFPQRAPKRK REQGRPSNKR DKASHEKLSK RPRFCSACRS NEHTLQRCLN RDPSIKRARR  780
PPTCSGCGIS GHTVDRCGKN QAAVHPEVMF L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG065900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J08534.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-73FAR1-related sequence 5