PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG046400.6.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 266aa    MW: 28091.6 Da    PI: 9.0852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG046400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.4e-06172217454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          a n+r r RR+++ +++  L++l+ +      +K + a++L +A  YI+ L
  Pavir.9NG046400.6.p 172 ATNKRPRVRREKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 217
                          679***********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.449168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-8173226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-5174222No hitNo description
SMARTSM003536.3E-6174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVKEEEIVAQ AGGRAYMDLL GLGEEDYLLC LSPSSYFSSS VVSTTTTTTS ATPAAAASPT  60
CASYLDPAPA YHHMLSFAGQ EQYHGGDVVF GFQYHGGDQA AIPVAVPQKS SPTTECSSSI  120
SSMSSSPPAT TISAISSPKP QGFKKKGSRS SDQRKAAPAA AVAHAATATG AATNKRPRVR  180
REKLGERIIA LQQLVSPFGK SDTASVLHEA LGYIRFLHDQ VQALSSPYMQ RLPASVHAPV  240
SRAGRQAKLH QCFFRSESPI GDYLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG046400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794178.11e-115transcription factor bHLH113-like
TrEMBLA0A3L6TPW71e-120A0A3L6TPW7_PANMI; Uncharacterized protein
STRINGPavir.Ia00382.1.p1e-171(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-22bHLH family protein