PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG042900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 350aa    MW: 37400.2 Da    PI: 7.1345
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG042900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31220275156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Pavir.9NG042900.1.p 220 KTRRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 275
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.968217277IPR017930Myb domain
SuperFamilySSF466891.79E-16218278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28219278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-25220275IPR006447Myb domain, plants
PfamPF002491.2E-7222273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGLDVAEIGM GLDLGLDLRL FAARSAVGMA AAAAKGAPAG IEACIRSLEE ERRKIEVFRR  60
ELPLCVRLLA DVIEELKEEA ARKGGDLELR PDDGDKRKWM STAQLWVDSD ATSKSEKEQP  120
SEMTSPEPKL LGGPMPIRAV PVVPPPPPPG FRRDDNAAGT ARLPGLSLLP PAAKTSVSPV  180
PAVDEHRQNA AARLSATMSP SGSGLNLHTQ TQQQQQLARK TRRCWSPELH RQFVAALHQL  240
GGPQVATPKQ IREVMQVDGL TNDEVKSHLQ KYRLHNRRSP GMAPVSQSIV LVGGLWSSQE  300
QSSSQSQSGS PQGPLQFSGS GMAVSAATVG GDSSSSDEDD KSDEGYSRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.92631e-100callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG042900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792667.11e-177transcription factor HHO5-like
TrEMBLA0A2S3IHS61e-176A0A2S3IHS6_9POAL; Uncharacterized protein
STRINGPavir.Ia00346.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-43G2-like family protein