PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG035500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 408aa MW: 41114.5 Da PI: 9.248

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG035500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	111	171	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ Pavir.9NG035500.1.p 111 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 171 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-36	99	169	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	115	169	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	115	169	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	117	153	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MVFSSVPVYL DPPNWNQHQQ QQQQAHHGQL PSGGGGGGVE GHAHHHQQHH QLPPVPPSGA 60 LMAPRPDMAT IVAAASGGGG GGAGGGGPTG GSSVRPGSMT ERARLAKIPQ PEPGLKCPRC 120 ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRNVPV GGGCRRNKRT KSSKSNSSSA 180 ASASSTGGTS SSTSSTNTGG SSAAAAAAAI MPPPQGQLPF LASLHHPLGG DHYSTGASRL 240 GFPGLSSLDP VDYQLGATAG PGTAIGGLEQ WRLPQIQQFP FLSRPDAVPP PMSGIYPFDV 300 EGHGDAAGFA GQMLGGSKVP GSAGPITQLA SVKMEDNPPS TAMTSSPREF LGLPGNLQFW 360 DGGNGASGNN GGTANAGGGG GGGAAAPGSS WVDLSAFNNS PSSGNIL*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MVFSSVPVYL DPPNWNQHQQ QQQQAHHGQL PSGGGGGGVE GHAHHHQQHH QLPPVPPSGA  60
LMAPRPDMAT IVAAASGGGG GGAGGGGPTG GSSVRPGSMT ERARLAKIPQ PEPGLKCPRC  120
ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRNVPV GGGCRRNKRT KSSKSNSSSA  180
ASASSTGGTS SSTSSTNTGG SSAAAAAAAI MPPPQGQLPF LASLHHPLGG DHYSTGASRL  240
GFPGLSSLDP VDYQLGATAG PGTAIGGLEQ WRLPQIQQFP FLSRPDAVPP PMSGIYPFDV  300
EGHGDAAGFA GQMLGGSKVP GSAGPITQLA SVKMEDNPPS TAMTSSPREF LGLPGNLQFW  360
DGGNGASGNN GGTANAGGGG GGGAAAPGSS WVDLSAFNNS PSSGNIL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20062	1e-68	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG035500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582401	0.0	KC582401.1 Sorghum bicolor dof4 protein (dof4) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792577.1	1e-175	dof zinc finger protein DOF2.4-like
TrEMBL	A0A3L6SDN7	1e-180	A0A3L6SDN7_PANMI; Dof zinc finger protein DOF2.4-like
STRING	Pavir.Ia00290.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	9e-43	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Pavir.9NG035500.1.p